WormBase 2024: status and transitioning to Alliance infrastructure

Paul W. Sternberg; Kimberly Van Auken; Qinghua Wang; Adam Wright; Karen Yook; Magdalena Zarowiecki; Valerio Arnaboldi; Andrés Becerra; Stephanie Brown; Scott Cain; Juancarlos Chan; Wen J. Chen; Jaehyoung Cho; Paul Davis; Stavros Diamantakis; Sarah Dyer; Dionysis Grigoriadis; Christian A. Grove; Todd Harris; Kevin Howe; Ranjana Kishore; Raymond Lee; Ian Longden; Manuel Luypaert; Hans Michael Müller; Paulo Nuin; Mark Quinton-Tulloch; Daniela Raciti; Tim Schedl; Gary Schindelman; Lincoln Stein

doi:10.1093/genetics/iyae050

WormBase 2024: status and transitioning to Alliance infrastructure

Paul W. Sternberg, Kimberly Van Auken, Qinghua Wang, Adam Wright, Karen Yook, Magdalena Zarowiecki, Valerio Arnaboldi, Andrés Becerra, Stephanie Brown, Scott Cain, Juancarlos Chan, Wen J. Chen, Jaehyoung Cho, Paul Davis, Stavros Diamantakis, Sarah Dyer, Dionysis Grigoriadis, Christian A. Grove, Todd Harris, Kevin HoweRanjana Kishore, Raymond Lee, Ian Longden, Manuel Luypaert, Hans Michael Müller, Paulo Nuin, Mark Quinton-Tulloch, Daniela Raciti, Tim Schedl, Gary Schindelman, Lincoln Stein

Research output: Contribution to journal › Article › peer-review

54 Scopus citations

Abstract

WormBase has been the major repository and knowledgebase of information about the genome and genetics of Caenorhabditis elegans and other nematodes of experimental interest for over 2 decades. We have 3 goals: to keep current with the fast-paced C. elegans research, to provide better integration with other resources, and to be sustainable. Here, we discuss the current state of WormBase as well as progress and plans for moving core WormBase infrastructure to the Alliance of Genome Resources (the Alliance). As an Alliance member, WormBase will continue to interact with the C. elegans community, develop new features as needed, and curate key information from the literature and large-scale projects.

Original language	English
Article number	iyae050
Journal	Genetics
Volume	227
Issue number	1
DOIs	https://doi.org/10.1093/genetics/iyae050
State	Published - May 2024

Keywords

Caenorhabditis elegans
Global Core Biodata Resources
bioinformatics tools
disease models
genome annotation
knowledgebase
model organism
software

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10.1093/genetics/iyae050

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Sternberg, P. W., Van Auken, K., Wang, Q., Wright, A., Yook, K., Zarowiecki, M., Arnaboldi, V., Becerra, A., Brown, S., Cain, S., Chan, J., Chen, W. J., Cho, J., Davis, P., Diamantakis, S., Dyer, S., Grigoriadis, D., Grove, C. A., Harris, T., ... Stein, L. (2024). WormBase 2024: status and transitioning to Alliance infrastructure. Genetics, 227(1), Article iyae050. https://doi.org/10.1093/genetics/iyae050

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title = "WormBase 2024: status and transitioning to Alliance infrastructure",

abstract = "WormBase has been the major repository and knowledgebase of information about the genome and genetics of Caenorhabditis elegans and other nematodes of experimental interest for over 2 decades. We have 3 goals: to keep current with the fast-paced C. elegans research, to provide better integration with other resources, and to be sustainable. Here, we discuss the current state of WormBase as well as progress and plans for moving core WormBase infrastructure to the Alliance of Genome Resources (the Alliance). As an Alliance member, WormBase will continue to interact with the C. elegans community, develop new features as needed, and curate key information from the literature and large-scale projects.",

keywords = "Caenorhabditis elegans, Global Core Biodata Resources, bioinformatics tools, disease models, genome annotation, knowledgebase, model organism, software",

author = "Sternberg, {Paul W.} and {Van Auken}, Kimberly and Qinghua Wang and Adam Wright and Karen Yook and Magdalena Zarowiecki and Valerio Arnaboldi and Andr{\'e}s Becerra and Stephanie Brown and Scott Cain and Juancarlos Chan and Chen, {Wen J.} and Jaehyoung Cho and Paul Davis and Stavros Diamantakis and Sarah Dyer and Dionysis Grigoriadis and Grove, {Christian A.} and Todd Harris and Kevin Howe and Ranjana Kishore and Raymond Lee and Ian Longden and Manuel Luypaert and M{\"u}ller, {Hans Michael} and Paulo Nuin and Mark Quinton-Tulloch and Daniela Raciti and Tim Schedl and Gary Schindelman and Lincoln Stein",

note = "Publisher Copyright: {\textcopyright} The Author(s) 2024. Published by Oxford University Press on behalf of The Genetics Society of America.",

year = "2024",

month = may,

doi = "10.1093/genetics/iyae050",

language = "English",

volume = "227",

journal = "Genetics",

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Sternberg, PW, Van Auken, K, Wang, Q, Wright, A, Yook, K, Zarowiecki, M, Arnaboldi, V, Becerra, A, Brown, S, Cain, S, Chan, J, Chen, WJ, Cho, J, Davis, P, Diamantakis, S, Dyer, S, Grigoriadis, D, Grove, CA, Harris, T, Howe, K, Kishore, R, Lee, R, Longden, I, Luypaert, M, Müller, HM, Nuin, P, Quinton-Tulloch, M, Raciti, D, Schedl, T, Schindelman, G & Stein, L 2024, 'WormBase 2024: status and transitioning to Alliance infrastructure', Genetics, vol. 227, no. 1, iyae050. https://doi.org/10.1093/genetics/iyae050

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AU - Diamantakis, Stavros

AU - Dyer, Sarah

AU - Grigoriadis, Dionysis

AU - Grove, Christian A.

AU - Harris, Todd

AU - Howe, Kevin

AU - Kishore, Ranjana

AU - Lee, Raymond

AU - Longden, Ian

AU - Luypaert, Manuel

AU - Müller, Hans Michael

AU - Nuin, Paulo

AU - Quinton-Tulloch, Mark

AU - Raciti, Daniela

AU - Schedl, Tim

AU - Schindelman, Gary

AU - Stein, Lincoln

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JO - Genetics

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WormBase 2024: status and transitioning to Alliance infrastructure

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Keywords

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