ViroMatch: A computational pipeline for the detection of viral sequences from complex metagenomic data

Todd N. Wylie; Kristine M. Wylie

doi:10.1128/MRA.01468-20

ViroMatch: A computational pipeline for the detection of viral sequences from complex metagenomic data

Research output: Contribution to journal › Article › peer-review

Abstract

ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies.

Original language	English
Article number	e01468-20
Journal	Microbiology Resource Announcements
Volume	10
Issue number	9
DOIs	https://doi.org/10.1128/MRA.01468-20
State	Published - Mar 4 2021

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10.1128/MRA.01468-20

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title = "ViroMatch: A computational pipeline for the detection of viral sequences from complex metagenomic data",

abstract = "ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies.",

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ViroMatch: A computational pipeline for the detection of viral sequences from complex metagenomic data

Abstract

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