TY - JOUR
T1 - TICL - A web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics
AU - Antonov, Alexey V.
AU - Dietmann, Sabine
AU - Wong, Philip
AU - Mewes, Hans W.
PY - 2009/4
Y1 - 2009/4
N2 - High-throughput metabolomics is a dynamically developing technology that enables the mass separation of complex mixtures at very high resolution. Metabolic profiling has begun to be widely used in clinical research to study the molecular mechanisms of complex cell disorders. Similar to transcriptomics, which is capable of detecting genes at differential states, metabolomics is able to deliver a list of compounds differentially present between explored cell physiological conditions. The bioinformatics challenge lies in a statistically valid interpretation of the functional context for identified sets of metabolites. Here, we present TICL, a web tool for the automatic interpretation of lists of compounds. The major advance of TICL is that it not only provides a model of possible compound transformations related to the input list, but also implements a robust statistical framework to estimate the significance of the inferred model. The TICL web tool is freely accessible at http://mips.helmholtz- muenchen.de/proj/cmp.
AB - High-throughput metabolomics is a dynamically developing technology that enables the mass separation of complex mixtures at very high resolution. Metabolic profiling has begun to be widely used in clinical research to study the molecular mechanisms of complex cell disorders. Similar to transcriptomics, which is capable of detecting genes at differential states, metabolomics is able to deliver a list of compounds differentially present between explored cell physiological conditions. The bioinformatics challenge lies in a statistically valid interpretation of the functional context for identified sets of metabolites. Here, we present TICL, a web tool for the automatic interpretation of lists of compounds. The major advance of TICL is that it not only provides a model of possible compound transformations related to the input list, but also implements a robust statistical framework to estimate the significance of the inferred model. The TICL web tool is freely accessible at http://mips.helmholtz- muenchen.de/proj/cmp.
KW - Bioinformatics tools for high-throughput metabolomics
KW - Metabolomics
KW - Statistical analysis and data mining
KW - Statistical and bioinformatics tools
KW - Web tools for metabolomics
UR - http://www.scopus.com/inward/record.url?scp=62149124281&partnerID=8YFLogxK
U2 - 10.1111/j.1742-4658.2009.06943.x
DO - 10.1111/j.1742-4658.2009.06943.x
M3 - Article
C2 - 19292876
AN - SCOPUS:62149124281
SN - 1742-464X
VL - 276
SP - 2084
EP - 2094
JO - FEBS Journal
JF - FEBS Journal
IS - 7
ER -