TY - JOUR
T1 - Statistical properties of ion channel records. Part II
T2 - Estimation from the macroscopic current
AU - Nekouzadeh, Ali
AU - Rudy, Yoram
N1 - Funding Information:
The authors thank Professor Christopher J. Lingle for providing the experimental data for this study. Many thanks go to Dr. Leonid Livshitz, Dr. Gregory Faber, Jonathan Silva, Thomas O’Hara, Keith Decker, Namit Guar and Niloufar Ghoreishi for useful advice and discussions and Li Li for her technical support. This research was supported by NIH-NHLBI Merit Award R37-HL 33343 and RO1-HL 49054 (to Y.R.). Yoram Rudy is the Fred Saigh Distinguished Professor at Washington University in St. Louis.
PY - 2007/11
Y1 - 2007/11
N2 - Macroscopic ion channel current is the summation of the stochastic records of individual channel currents and therefore relates to their statistical properties. As a consequence of this relationship, it may be possible to derive certain statistical properties of single channel records or even generate some estimates of the records themselves from the macroscopic current when the direct measurement of single channel currents is not applicable. We present a procedure for generating the single channel records of an ion channel from its macroscopic current when the stochastic process of channel gating has the following two properties: (I) the open duration is independent of the time of opening event and has a single exponential probability density function (pdf), (II) all the channels have the same probability to open at time t. The application of this procedure is considered for cases where direct measurement of single channel records is difficult or impossible. First, the probability density function (pdf) of opening events, a statistical property of single channel records, is derived from the normalized macroscopic current and mean channel open duration. Second, it is shown that under the conditions (I) and (II), a non-stationary Markov model can represent the stochastic process of channel gating. Third, the non-stationary Markov model is calibrated using the results of the first step. The non-stationary formulation increases the model ability to generate a variety of different single channel records compared to common stationary Markov models. The model is then used to generate single channel records and to obtain other statistical properties of the records. Experimental single channel records of inactivating BK potassium channels are used to evaluate how accurately this procedure reconstructs measured single channel sweeps.
AB - Macroscopic ion channel current is the summation of the stochastic records of individual channel currents and therefore relates to their statistical properties. As a consequence of this relationship, it may be possible to derive certain statistical properties of single channel records or even generate some estimates of the records themselves from the macroscopic current when the direct measurement of single channel currents is not applicable. We present a procedure for generating the single channel records of an ion channel from its macroscopic current when the stochastic process of channel gating has the following two properties: (I) the open duration is independent of the time of opening event and has a single exponential probability density function (pdf), (II) all the channels have the same probability to open at time t. The application of this procedure is considered for cases where direct measurement of single channel records is difficult or impossible. First, the probability density function (pdf) of opening events, a statistical property of single channel records, is derived from the normalized macroscopic current and mean channel open duration. Second, it is shown that under the conditions (I) and (II), a non-stationary Markov model can represent the stochastic process of channel gating. Third, the non-stationary Markov model is calibrated using the results of the first step. The non-stationary formulation increases the model ability to generate a variety of different single channel records compared to common stationary Markov models. The model is then used to generate single channel records and to obtain other statistical properties of the records. Experimental single channel records of inactivating BK potassium channels are used to evaluate how accurately this procedure reconstructs measured single channel sweeps.
KW - Ion channel gating
KW - Ion channel statistics
KW - Ion channel sweeps
KW - Ion channels
KW - Markov model
UR - https://www.scopus.com/pages/publications/35248827013
U2 - 10.1016/j.mbs.2007.04.003
DO - 10.1016/j.mbs.2007.04.003
M3 - Article
C2 - 17544011
AN - SCOPUS:35248827013
SN - 0025-5564
VL - 210
SP - 315
EP - 334
JO - Mathematical Biosciences
JF - Mathematical Biosciences
IS - 1
ER -