TY - JOUR
T1 - Statistical properties of ion channel records. Part I
T2 - Relationship to the macroscopic current
AU - Nekouzadeh, Ali
AU - Rudy, Yoram
N1 - Funding Information:
The authors thank Professor Christopher J. Lingle for providing the experimental data for this study. Many thanks go to Dr. Leonid Livshitz, Dr. Gregory Faber, Jonathan Silva, Thomas O’Hara, Keith Decker, Namit Gaur and Niloufar Ghoreishi for useful advice and discussions. This research was supported by NIH-NHLBI Merit Award R37-HL 33343 and RO1-HL 49054 (to Y.R.). Yoram Rudy is the Fred Saigh Distinguished Professor at Washington University in St. Louis.
PY - 2007/11
Y1 - 2007/11
N2 - Macroscopic ion channel current can be derived by summation of the stochastic records of individual channel currents. In this paper, we present two probability density functions of single channel records that can uniquely determine the macroscopic current regardless of other statistical properties of records or the stochastic model of channel gating (presented often with stationary Markov models). We show that H(t), probability density function of channel opening events (introduced explicitly in this paper), and D(t), probability density function of the open duration (sometimes has named dwell time distribution as well), determine the normalized macroscopic current, G(t), throughG (t) = P (t) - H (t) * Q (t)where P(t) is the cumulative density function of H(t), Q(t) is the cumulative density function of D(t), * is the symbol of convolution integral and G(t) is the macroscopic current divided by the amplitude of single channel current and the number of single channel sweeps. Compared to other equations for the macroscopic current, here the macroscopic current is expressed only in terms of the statistical properties of single channel current and not the stochastic model of ion channel gating or a conditioned form of macroscopic current. Single channel currents of an inactivating BK channel were used to validate this relationship experimentally too. In this paper, we used median filters as they can remove the unwanted noise without smoothing the transitions between open and closed states (compare to low pass filters). This filtering leads to more accurate measurement of transition times and less amount of missed events.
AB - Macroscopic ion channel current can be derived by summation of the stochastic records of individual channel currents. In this paper, we present two probability density functions of single channel records that can uniquely determine the macroscopic current regardless of other statistical properties of records or the stochastic model of channel gating (presented often with stationary Markov models). We show that H(t), probability density function of channel opening events (introduced explicitly in this paper), and D(t), probability density function of the open duration (sometimes has named dwell time distribution as well), determine the normalized macroscopic current, G(t), throughG (t) = P (t) - H (t) * Q (t)where P(t) is the cumulative density function of H(t), Q(t) is the cumulative density function of D(t), * is the symbol of convolution integral and G(t) is the macroscopic current divided by the amplitude of single channel current and the number of single channel sweeps. Compared to other equations for the macroscopic current, here the macroscopic current is expressed only in terms of the statistical properties of single channel current and not the stochastic model of ion channel gating or a conditioned form of macroscopic current. Single channel currents of an inactivating BK channel were used to validate this relationship experimentally too. In this paper, we used median filters as they can remove the unwanted noise without smoothing the transitions between open and closed states (compare to low pass filters). This filtering leads to more accurate measurement of transition times and less amount of missed events.
KW - Ion channel current
KW - Ion channel statistics
KW - Ion channels
UR - https://www.scopus.com/pages/publications/35248845632
U2 - 10.1016/j.mbs.2007.04.004
DO - 10.1016/j.mbs.2007.04.004
M3 - Article
C2 - 17540412
AN - SCOPUS:35248845632
SN - 0025-5564
VL - 210
SP - 291
EP - 314
JO - Mathematical Biosciences
JF - Mathematical Biosciences
IS - 1
ER -