TY - JOUR
T1 - Solution structure and dynamics of ADF from Toxoplasma gondii
AU - Yadav, Rahul
AU - Pathak, Prem Prakash
AU - Shukla, Vaibhav Kumar
AU - Jain, Anupam
AU - Srivastava, Shubhra
AU - Tripathi, Sarita
AU - Krishna Pulavarti, S. V.S.R.
AU - Mehta, Simren
AU - David Sibley, L.
AU - Arora, Ashish
N1 - Funding Information:
This work was supported by grants from CSIR Network NWP0038 (to AA) and the National Institutes of Health (to LDS). R.Y. is recipient of research fellowship from DBT, India. P.P.P., and V.K.S are recipient of research fellowships from the Council of Scientific and Industrial Research (CSIR), New Delhi, India. S.S. is recipient of research fellowships from ICMR, India. We thank Prof. C.L. Khetrapal, Director, CBMR, Lucknow, for access to the Bruker 800 MHz spectrometer. We thank Dr. Raja Roy, and Dr. Dinesh kumar for help. We thank Dr. Chhitar Mal Gupta, distinguished scientist DBT, India, Dr. Amogh Anant Sahasrabuddhe and Mr. Rajendra Kumar Srivastava for their help in preparing actin.
PY - 2011/10
Y1 - 2011/10
N2 - Toxoplasma gondii ADF (TgADF) belongs to a functional subtype characterized by strong G-actin sequestering activity and low F-actin severing activity. Among the characterized ADF/cofilin proteins, TgADF has the shortest length and is missing a C-terminal helix implicated in F-actin binding. In order to understand its characteristic properties, we have determined the solution structure of TgADF and studied its backbone dynamics from 15N-relaxation measurements. TgADF has conserved ADF/cofilin fold consisting of a central mixed β-sheet comprised of six β-strands that are partially surrounded by three α-helices and a C-terminal helical turn. The high G-actin sequestering activity of TgADF relies on highly structurally and dynamically optimized interactions between G-actin and G-actin binding surface of TgADF. The equilibrium dissociation constant for TgADF and rabbit muscle G-actin was 23.81nM, as measured by ITC, which reflects very strong affinity of TgADF and G-actin interactions. The F-actin binding site of TgADF is partially formed, with a shortened F-loop that does not project out of the ellipsoid structure and a C-terminal helical turn in place of the C-terminal helix α4. Yet, it is more rigid than the F-actin binding site of Leishmania donovani cofilin. Experimental observations and structural features do not support the interaction of PIP2 with TgADF, and PIP2 does not affect the interaction of TgADF with G-actin. Overall, this study suggests that conformational flexibility of G-actin binding sites enhances the affinity of TgADF for G-actin, while conformational rigidity of F-actin binding sites of conventional ADF/cofilins is necessary for stable binding to F-actin.
AB - Toxoplasma gondii ADF (TgADF) belongs to a functional subtype characterized by strong G-actin sequestering activity and low F-actin severing activity. Among the characterized ADF/cofilin proteins, TgADF has the shortest length and is missing a C-terminal helix implicated in F-actin binding. In order to understand its characteristic properties, we have determined the solution structure of TgADF and studied its backbone dynamics from 15N-relaxation measurements. TgADF has conserved ADF/cofilin fold consisting of a central mixed β-sheet comprised of six β-strands that are partially surrounded by three α-helices and a C-terminal helical turn. The high G-actin sequestering activity of TgADF relies on highly structurally and dynamically optimized interactions between G-actin and G-actin binding surface of TgADF. The equilibrium dissociation constant for TgADF and rabbit muscle G-actin was 23.81nM, as measured by ITC, which reflects very strong affinity of TgADF and G-actin interactions. The F-actin binding site of TgADF is partially formed, with a shortened F-loop that does not project out of the ellipsoid structure and a C-terminal helical turn in place of the C-terminal helix α4. Yet, it is more rigid than the F-actin binding site of Leishmania donovani cofilin. Experimental observations and structural features do not support the interaction of PIP2 with TgADF, and PIP2 does not affect the interaction of TgADF with G-actin. Overall, this study suggests that conformational flexibility of G-actin binding sites enhances the affinity of TgADF for G-actin, while conformational rigidity of F-actin binding sites of conventional ADF/cofilins is necessary for stable binding to F-actin.
KW - G-actin
KW - NMR
KW - PIP2
KW - Protein dynamics
KW - TgADF
KW - Toxoplasma gondii
UR - http://www.scopus.com/inward/record.url?scp=80052288545&partnerID=8YFLogxK
U2 - 10.1016/j.jsb.2011.07.011
DO - 10.1016/j.jsb.2011.07.011
M3 - Article
C2 - 21820516
AN - SCOPUS:80052288545
SN - 1047-8477
VL - 176
SP - 97
EP - 111
JO - Journal of Structural Biology
JF - Journal of Structural Biology
IS - 1
ER -