Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles

  • Christophe Narth
  • , Louis Lagardère
  • , Étienne Polack
  • , Nohad Gresh
  • , Qiantao Wang
  • , David R. Bell
  • , Joshua A. Rackers
  • , Jay W. Ponder
  • , Pengyu Y. Ren
  • , Jean Philip Piquemal

Research output: Contribution to journalArticlepeer-review

24 Scopus citations

Abstract

We propose a general coupling of the Smooth Particle Mesh Ewald SPME approach for distributed multipoles to a short-range charge penetration correction modifying the charge-charge, charge-dipole and charge-quadrupole energies. Such an approach significantly improves electrostatics when compared to ab initio values and has been calibrated on Symmetry-Adapted Perturbation Theory reference data. Various neutral molecular dimers have been tested and results on the complexes of mono- and divalent cations with a water ligand are also provided. Transferability of the correction is adressed in the context of the implementation of the AMOEBA and SIBFA polarizable force fields in the TINKER-HP software. As the choices of the multipolar distribution are discussed, conclusions are drawn for the future penetration-corrected polarizable force fields highlighting the mandatory need of non-spurious procedures for the obtention of well balanced and physically meaningful distributed moments. Finally, scalability and parallelism of the short-range corrected SPME approach are addressed, demonstrating that the damping function is computationally affordable and accurate for molecular dynamics simulations of complex bio- or bioinorganic systems in periodic boundary conditions.

Original languageEnglish
Pages (from-to)494-505
Number of pages12
JournalJournal of Computational Chemistry
Volume37
Issue number5
DOIs
StatePublished - Feb 15 2016

Keywords

  • electrostatics
  • energy decomposition analysis
  • polarizable force fields

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