TY - JOUR
T1 - RevGadgets
T2 - An R package for visualizing Bayesian phylogenetic analyses from RevBayes
AU - Tribble, Carrie M.
AU - Freyman, William A.
AU - Landis, Michael J.
AU - Lim, Jun Ying
AU - Barido-Sottani, Joellë
AU - Kopperud, Bjørn Tore
AU - Hӧhna, Sebastian
AU - May, Michael R.
N1 - Funding Information:
We would like to acknowledge Carl J. Rothfels, Benjamin K. Blackman, David D. Ackerly and Chelsea D. Specht for feedback on initial stages of this manuscript. Ixchel González Ramírez, Jenna T. B. Ekwealor, Isaac Lichter-Marck and members of the Rothfels Lab at UC Berkeley provided valuable feedback on usability and legibility of figures and code. Klaus Schliep and an anonymous reviewer provided important feedback on the package structure and stability. Andrew Magee, Kengo Nagashima, Klaus Schliep and Josef Uyeda contributed code. This research was supported by the Deutsche Forschungsgemeinschaft (DFG) Emmy Noether Program HO 6201/1-1 awarded to S.H., a National Science Foundation (NSF) award (DEB 2040347) to M.J.L. and an NSF GRFP award to C.M.T.
Funding Information:
We would like to acknowledge Carl J. Rothfels, Benjamin K. Blackman, David D. Ackerly and Chelsea D. Specht for feedback on initial stages of this manuscript. Ixchel González Ramírez, Jenna T. B. Ekwealor, Isaac Lichter‐Marck and members of the Rothfels Lab at UC Berkeley provided valuable feedback on usability and legibility of figures and code. Klaus Schliep and an anonymous reviewer provided important feedback on the package structure and stability. Andrew Magee, Kengo Nagashima, Klaus Schliep and Josef Uyeda contributed code. This research was supported by the Deutsche Forschungsgemeinschaft (DFG) Emmy Noether Program HO 6201/1‐1 awarded to S.H., a National Science Foundation (NSF) award (DEB 2040347) to M.J.L. and an NSF GRFP award to C.M.T.
Publisher Copyright:
© 2021 British Ecological Society
PY - 2022/2
Y1 - 2022/2
N2 - Statistical phylogenetic methods are the foundation for a wide range of evolutionary and epidemiological studies. However, as these methods grow increasingly complex, users often encounter significant challenges with summarizing, visualizing and communicating their key results. We present RevGadgets, an R package for creating publication-quality figures from the results of a large variety of phylogenetic analyses performed in RevBayes (and other phylogenetic software packages). We demonstrate how to use RevGadgets through a set of vignettes that cover the most common use cases that researchers will encounter. RevGadgets is an open-source, extensible package that will continue to evolve in parallel with RevBayes, helping researchers to make sense of and communicate the results of a diverse array of analyses.
AB - Statistical phylogenetic methods are the foundation for a wide range of evolutionary and epidemiological studies. However, as these methods grow increasingly complex, users often encounter significant challenges with summarizing, visualizing and communicating their key results. We present RevGadgets, an R package for creating publication-quality figures from the results of a large variety of phylogenetic analyses performed in RevBayes (and other phylogenetic software packages). We demonstrate how to use RevGadgets through a set of vignettes that cover the most common use cases that researchers will encounter. RevGadgets is an open-source, extensible package that will continue to evolve in parallel with RevBayes, helping researchers to make sense of and communicate the results of a diverse array of analyses.
UR - http://www.scopus.com/inward/record.url?scp=85120357641&partnerID=8YFLogxK
U2 - 10.1111/2041-210X.13750
DO - 10.1111/2041-210X.13750
M3 - Article
AN - SCOPUS:85120357641
SN - 2041-210X
VL - 13
SP - 314
EP - 323
JO - Methods in Ecology and Evolution
JF - Methods in Ecology and Evolution
IS - 2
ER -