TY - JOUR
T1 - Resequencing analysis of the candidate tyrosine kinase and RAS pathway gene families in multiple myeloma
AU - Hucthagowder, Vishwanathan
AU - Meyer, Rekha
AU - Mullins, Chelsea
AU - Nagarajan, Rakesh
AU - DiPersio, John F.
AU - Vij, Ravi
AU - Tomasson, Michael H.
AU - Kulkarni, Shashikant
N1 - Funding Information:
This work was supported by the Department of Pathology and Immunology and the Division of Oncology at Washington University School of Medicine and NCI grant ( #1R21CA116168 ). We thank the Alvin J. Siteman Cancer Center at Washington University School of Medicine and Barnes-Jewish Hospital in St. Louis, MO, for the use of the Biomedical Informatics Core, which provided the in silico analysis service. The Siteman Cancer Center is supported in part by NCI Cancer Center Support Grant #P30 CA91842 . This publication was made possible by Grant Number UL1 RR024992 from the National Center for Research Resources .
PY - 2012/9
Y1 - 2012/9
N2 - Multiple myeloma (MM) is an incurable, B-cell malignancy characterized by the clonal proliferation and accumulation of malignant plasma cells in bone marrow. Despite recent advances in the understanding of genomic aberrations, a comprehensive catalogue of clinically actionable mutations in MM is just beginning to emerge. The tyrosine kinase (TK) and RAS oncogenes, which encode important regulators of various signaling pathways, are among the most frequently altered gene families in cancer. To clarify the role of TK and RAS genes in the pathogenesis of MM, we performed a systematic, targeted screening of mutations on prioritized RAS and TK genes, in CD138-sorted bone marrow specimens from 42 untreated patients. We identified a total of 24 mutations in the KRAS, PIK3CA, INSR, LTK, and MERTK genes. In particular, seven novel mutations in addition to known KRAS mutations were observed. Prediction analysis tools PolyPhen and Sorting Intolerant from Tolerant (SIFT) were used to assess the functional significance of these novel mutations. Our analysis predicted that these mutations may have a deleterious effect, resulting in the functional alteration of proteins involved in the pathogenesis of myeloma. While further investigation is needed to determine the functional consequences of these proteins, mutational testing of the RAS and TK genes in larger myeloma cohorts might also be useful to establish the recurrent nature of these mutations.
AB - Multiple myeloma (MM) is an incurable, B-cell malignancy characterized by the clonal proliferation and accumulation of malignant plasma cells in bone marrow. Despite recent advances in the understanding of genomic aberrations, a comprehensive catalogue of clinically actionable mutations in MM is just beginning to emerge. The tyrosine kinase (TK) and RAS oncogenes, which encode important regulators of various signaling pathways, are among the most frequently altered gene families in cancer. To clarify the role of TK and RAS genes in the pathogenesis of MM, we performed a systematic, targeted screening of mutations on prioritized RAS and TK genes, in CD138-sorted bone marrow specimens from 42 untreated patients. We identified a total of 24 mutations in the KRAS, PIK3CA, INSR, LTK, and MERTK genes. In particular, seven novel mutations in addition to known KRAS mutations were observed. Prediction analysis tools PolyPhen and Sorting Intolerant from Tolerant (SIFT) were used to assess the functional significance of these novel mutations. Our analysis predicted that these mutations may have a deleterious effect, resulting in the functional alteration of proteins involved in the pathogenesis of myeloma. While further investigation is needed to determine the functional consequences of these proteins, mutational testing of the RAS and TK genes in larger myeloma cohorts might also be useful to establish the recurrent nature of these mutations.
KW - Cancer
KW - Multiple myeloma
KW - Mutation analysis
KW - RAS
KW - Resequencing
KW - Tyrosine kinase
UR - http://www.scopus.com/inward/record.url?scp=84869822590&partnerID=8YFLogxK
U2 - 10.1016/j.cancergen.2012.06.007
DO - 10.1016/j.cancergen.2012.06.007
M3 - Article
C2 - 22939401
AN - SCOPUS:84869822590
SN - 2210-7762
VL - 205
SP - 474
EP - 478
JO - Cancer Genetics
JF - Cancer Genetics
IS - 9
ER -