Rapid RNA folding: Analysis and acceleration of the Zuker recurrence

Keyphrases

• RNA Folding 100%
• Folding Analysis 100%
• Polyhedral Analysis 75%
• Virtex-4 50%
• Bioinformatics 25%
• Tesla 25%
• Computational Biology 25%
• Intel 25%
• NVIDIA 25%
• Length Dependency 25%
• Compute-intensive 25%
• Xilinx Virtex 25%
• Unfolding Algorithm 25%
• Search Application 25%
• Dynamic Programming 25%
• Effective Data 25%
• Memory Resource 25%
• Large number of Variables 25%
• Hardware Efficiency 25%
• Data Tiling 25%
• Logic Resource 25%
• Data pipeline 25%
• Data Use 25%
• GPU 25%

Computer Science

• Field Programmable Gate Arrays 100%
• Variable Length 33%
• Intensive Task 33%
• Dynamic Programming 33%
• Pipelining 33%
• Memory Resource 33%
• Graphics Processing Unit 33%
• Bioinformatics 33%