QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D. Bushman; Elizabeth K. Costello; Noah Fierer; Antonio Gonzalez Pẽa; Julia K. Goodrich; Jeffrey I. Gordon; Gavin A. Huttley; Scott T. Kelley; Dan Knights; Jeremy E. Koenig; Ruth E. Ley; Catherine A. Lozupone; Daniel McDonald; Brian D. Muegge; Meg Pirrung; Jens Reeder; Joel R. Sevinsky; Peter J. Turnbaugh; William A. Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight

doi:10.1038/nmeth.f.303

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso
, Justin Kuczynski
, Jesse Stombaugh
, Kyle Bittinger
, Frederic D. Bushman
, Elizabeth K. Costello
, Noah Fierer
, Antonio Gonzalez Pẽa
, Julia K. Goodrich
, Jeffrey I. Gordon
, Gavin A. Huttley
, Scott T. Kelley
, Dan Knights
, Jeremy E. Koenig
, Ruth E. Ley
, Catherine A. Lozupone
, Daniel McDonald
, Brian D. Muegge
, Meg Pirrung
, Jens Reeder

Joel R. Sevinsky, Peter J. Turnbaugh, William A. Walters, Jeremy Widmann, Tanya Yatsunenko, Jesse Zaneveld, Rob Knight

Research output: Contribution to journal › Letter › peer-review

30148 Scopus citations

Original language	English
Pages (from-to)	335-336
Number of pages	2
Journal	Nature Methods
Volume	7
Issue number	5
DOIs	https://doi.org/10.1038/nmeth.f.303
State	Published - May 2010

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10.1038/nmeth.f.303

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Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Pẽa, A. G., Goodrich, J. K., Gordon, J. I., Huttley, G. A., Kelley, S. T., Knights, D., Koenig, J. E., Ley, R. E., Lozupone, C. A., McDonald, D., Muegge, B. D., Pirrung, M., ... Knight, R. (2010). QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7(5), 335-336. https://doi.org/10.1038/nmeth.f.303

@article{2cd6000a8ef44edcb879fa6b19bf4dc2,

title = "QIIME allows analysis of high-throughput community sequencing data",

author = "Caporaso, \{J. Gregory\} and Justin Kuczynski and Jesse Stombaugh and Kyle Bittinger and Bushman, \{Frederic D.\} and Costello, \{Elizabeth K.\} and Noah Fierer and Pẽa, \{Antonio Gonzalez\} and Goodrich, \{Julia K.\} and Gordon, \{Jeffrey I.\} and Huttley, \{Gavin A.\} and Kelley, \{Scott T.\} and Dan Knights and Koenig, \{Jeremy E.\} and Ley, \{Ruth E.\} and Lozupone, \{Catherine A.\} and Daniel McDonald and Muegge, \{Brian D.\} and Meg Pirrung and Jens Reeder and Sevinsky, \{Joel R.\} and Turnbaugh, \{Peter J.\} and Walters, \{William A.\} and Jeremy Widmann and Tanya Yatsunenko and Jesse Zaneveld and Rob Knight",

note = "Funding Information: We thank our collaborators for their helpful suggestions on features, documentation and the manuscript, and our funding agencies for their commitment to open-source software. This work was supported in part by Howard Hughes Medical Institute and grants from the Crohn{\textquoteright}s and Colitis Foundation of America, the German Academic Exchange Service, the Bill and Melinda Gates Foundation, the Colorado Center for Biofuels and Biorefining and the US National Institutes of Health (DK78669, GM65103, GM8759, HG4872 and its ARRA supplement, HG4866, DK83981 and LM9451).",

year = "2010",

month = may,

doi = "10.1038/nmeth.f.303",

language = "English",

volume = "7",

pages = "335--336",

journal = "Nature Methods",

issn = "1548-7091",

number = "5",

}

Caporaso, JG, Kuczynski, J, Stombaugh, J, Bittinger, K, Bushman, FD, Costello, EK, Fierer, N, Pẽa, AG, Goodrich, JK, Gordon, JI, Huttley, GA, Kelley, ST, Knights, D, Koenig, JE, Ley, RE, Lozupone, CA, McDonald, D, Muegge, BD, Pirrung, M, Reeder, J, Sevinsky, JR, Turnbaugh, PJ, Walters, WA, Widmann, J, Yatsunenko, T, Zaneveld, J & Knight, R 2010, 'QIIME allows analysis of high-throughput community sequencing data', Nature Methods, vol. 7, no. 5, pp. 335-336. https://doi.org/10.1038/nmeth.f.303

TY - JOUR

T1 - QIIME allows analysis of high-throughput community sequencing data

AU - Caporaso, J. Gregory

AU - Kuczynski, Justin

AU - Stombaugh, Jesse

AU - Bittinger, Kyle

AU - Bushman, Frederic D.

AU - Costello, Elizabeth K.

AU - Fierer, Noah

AU - Pẽa, Antonio Gonzalez

AU - Goodrich, Julia K.

AU - Gordon, Jeffrey I.

AU - Huttley, Gavin A.

AU - Kelley, Scott T.

AU - Knights, Dan

AU - Koenig, Jeremy E.

AU - Ley, Ruth E.

AU - Lozupone, Catherine A.

AU - McDonald, Daniel

AU - Muegge, Brian D.

AU - Pirrung, Meg

AU - Reeder, Jens

AU - Sevinsky, Joel R.

AU - Turnbaugh, Peter J.

AU - Walters, William A.

AU - Widmann, Jeremy

AU - Yatsunenko, Tanya

AU - Zaneveld, Jesse

AU - Knight, Rob

N1 - Funding Information: We thank our collaborators for their helpful suggestions on features, documentation and the manuscript, and our funding agencies for their commitment to open-source software. This work was supported in part by Howard Hughes Medical Institute and grants from the Crohn’s and Colitis Foundation of America, the German Academic Exchange Service, the Bill and Melinda Gates Foundation, the Colorado Center for Biofuels and Biorefining and the US National Institutes of Health (DK78669, GM65103, GM8759, HG4872 and its ARRA supplement, HG4866, DK83981 and LM9451).

PY - 2010/5

Y1 - 2010/5

UR - https://www.scopus.com/pages/publications/77952243141

U2 - 10.1038/nmeth.f.303

DO - 10.1038/nmeth.f.303

M3 - Letter

C2 - 20383131

AN - SCOPUS:77952243141

SN - 1548-7091

VL - 7

SP - 335

EP - 336

JO - Nature Methods

JF - Nature Methods

IS - 5

ER -

QIIME allows analysis of high-throughput community sequencing data

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