ORegAnno 3.0: A community-driven resource for curated regulatory annotation

Robert Lesurf, Kelsy C. Cotto, Grace Wang, Malachi Griffith, Katayoon Kasaian, Steven J.M. Jones, Stephen B. Montgomery, Obi L. Griffith

Research output: Contribution to journalArticle

43 Scopus citations

Abstract

The Open Regulatory Annotation database (ORe-gAnno) is a resource for curated regulatory annotation. It contains information about regulatory regions, transcription factor binding sites, RNA binding sites, regulatory variants, haplotypes, and other regulatory elements. ORegAnno differentiates itself from other regulatory resources by facilitating crowd-sourced interpretation and annotation of regulatory observations from the literature and highly curated resources. It contains a comprehensive annotation scheme that aims to describe both the elements and outcomes of regulatory events. Moreover, ORe-gAnno assembles these disparate data sources and annotations into a single, high quality catalogue of curated regulatory information. The current release is an update of the database previously featured in the NAR Database Issue, and now contains 1 948 307 records, across 18 species, with a combined coverage of 334 215 080 bp. Complete records, annotation, and other associated data are available for browsing and download at http://www.oreganno.org/.

Original languageEnglish
Pages (from-to)D126-D132
JournalNucleic acids research
Volume44
Issue numberD1
DOIs
StatePublished - Jan 1 2016

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    Lesurf, R., Cotto, K. C., Wang, G., Griffith, M., Kasaian, K., Jones, S. J. M., Montgomery, S. B., & Griffith, O. L. (2016). ORegAnno 3.0: A community-driven resource for curated regulatory annotation. Nucleic acids research, 44(D1), D126-D132. https://doi.org/10.1093/nar/gkv1203