TY - JOUR
T1 - Optimality and saturation in axonal chemotaxis
AU - Yuan, Jiajia
AU - Chan, Stanley
AU - Mortimer, Duncan
AU - Nguyen, Huyen
AU - Goodhill, Geoffrey J.
PY - 2013
Y1 - 2013
N2 - Chemotaxis (detecting and following chemical gradients) plays a crucial role in the function of many biological systems. In particular, gradient following by neuronal growth cones is important for the correct wiring of the nervous system. There is increasing interest in the constraints that determine how small chemotacting devices respond to gradients, but little quantitative information is available in this regard for neuronal growth cones. Mortimer et al. (2009) and Mortimer, Dayan, Burrage, and Goodhill (2011) proposed a Bayesian ideal observer modelthat predicts chemotactic performance for shallow gradients.Herewe investigated two importantaspects of this model. First, we found by numerical simulation that although the analytical predictions of themodel assume shallow gradients, these predictions remain remarkably robust tolarge deviations in gradient steepness. Second, we found experimentally that the chemotactic response increased linearly with gradient steepness for very shallow gradients as predicted by the model; however, the response saturated for steeper gradients. This saturation could be reproduced in simulations of a growth rate modulation response mechanism. Together these results illuminate the domain of validity of the Bayesian model and give further insight into the biological mechanisms of axonal chemotaxis.
AB - Chemotaxis (detecting and following chemical gradients) plays a crucial role in the function of many biological systems. In particular, gradient following by neuronal growth cones is important for the correct wiring of the nervous system. There is increasing interest in the constraints that determine how small chemotacting devices respond to gradients, but little quantitative information is available in this regard for neuronal growth cones. Mortimer et al. (2009) and Mortimer, Dayan, Burrage, and Goodhill (2011) proposed a Bayesian ideal observer modelthat predicts chemotactic performance for shallow gradients.Herewe investigated two importantaspects of this model. First, we found by numerical simulation that although the analytical predictions of themodel assume shallow gradients, these predictions remain remarkably robust tolarge deviations in gradient steepness. Second, we found experimentally that the chemotactic response increased linearly with gradient steepness for very shallow gradients as predicted by the model; however, the response saturated for steeper gradients. This saturation could be reproduced in simulations of a growth rate modulation response mechanism. Together these results illuminate the domain of validity of the Bayesian model and give further insight into the biological mechanisms of axonal chemotaxis.
UR - http://www.scopus.com/inward/record.url?scp=84877808672&partnerID=8YFLogxK
U2 - 10.1162/NECO_a_00426
DO - 10.1162/NECO_a_00426
M3 - Letter
C2 - 23339614
AN - SCOPUS:84877808672
SN - 0899-7667
VL - 25
SP - 833
EP - 853
JO - Neural Computation
JF - Neural Computation
IS - 4
ER -