@article{ea4849d7146b4269993e31e69bb66b36,
title = "Multispectral tracing in densely labeled mouse brain with nTracer",
abstract = "This note describes nTracer, an ImageJ plug-in for user-guided, semi-automated tracing of multispectral fluorescent tissue samples. This approach allows for rapid and accurate reconstruction of whole cell morphology of large neuronal populations in densely labeled brains. Availability and implementation: nTracer was written as a plug-in for the open source image processing software ImageJ. The software, instructional documentation, tutorial videos, sample image and sample tracing results are available at https://www.cai-lab.org/ntracer-tutorial.",
author = "Roossien, {Douglas H.} and Sadis, {Benjamin V.} and Yan Yan and Webb, {John M.} and Min, {Lia Y.} and Dizaji, {Aslan S.} and Bogart, {Luke J.} and Cristina Mazuski and Huth, {Robert S.} and Stecher, {Johanna S.} and Sriakhila Akula and Fred Shen and Ye Li and Tingxin Xiao and Madeleine Vandenbrink and Lichtman, {Jeff W.} and Hensch, {Takao K.} and Herzog, {Erik D.} and Dawen Cai",
note = "Funding Information: Y.Y. and D.C. were supported by Michigan miBRAIN initiative. D.H.R. and D.C. were supported by the National Institutes of Health/the National Institute of Allergy and Infectious Diseases [R01AI130303]; and National Science Foundation/Neuronex-Multimodal Integrated Neural Technologies [NSF-1707316]. D.C. was supported by the National Institutes of Health/the National Institute of Mental Health [R01MH110932]. C.M. was supported by the National Institutes of Health [F31GM116517]. E.D.H. was supported by the National Institutes of Health/the National Institute of Neurological Disorders and Stroke [R01NS095367]. T.K.H. and J.W.L. were supported by the National Institutes of Health/the National Institute of Mental Health Silvio Conte Center [P50MH094271]. J.W.L. was supported by the National Institutes of Health [DP2OD006514, R01NS076467, U01NS090449, P41GM10371]; and Multidisciplinary University Research Initiative Army Research Office [W911NF1210594, IIS-1447786]. Publisher Copyright: {\textcopyright} 2019. Published by Oxford University Press. 3544.",
year = "2019",
month = sep,
day = "15",
doi = "10.1093/bioinformatics/btz084",
language = "English",
volume = "35",
pages = "3544--3546",
journal = "Bioinformatics",
issn = "1367-4803",
number = "18",
}