TY - JOUR
T1 - Julia for biologists
AU - Roesch, Elisabeth
AU - Greener, Joe G.
AU - MacLean, Adam L.
AU - Nassar, Huda
AU - Rackauckas, Christopher
AU - Holy, Timothy E.
AU - Stumpf, Michael P.H.
N1 - Publisher Copyright:
© 2023, Springer Nature America, Inc.
PY - 2023/5
Y1 - 2023/5
N2 - Major computational challenges exist in relation to the collection, curation, processing and analysis of large genomic and imaging datasets, as well as the simulation of larger and more realistic models in systems biology. Here we discuss how a relative newcomer among programming languages—Julia—is poised to meet the current and emerging demands in the computational biosciences and beyond. Speed, flexibility, a thriving package ecosystem and readability are major factors that make high-performance computing and data analysis available to an unprecedented degree. We highlight how Julia’s design is already enabling new ways of analyzing biological data and systems, and we provide a list of resources that can facilitate the transition into Julian computing.
AB - Major computational challenges exist in relation to the collection, curation, processing and analysis of large genomic and imaging datasets, as well as the simulation of larger and more realistic models in systems biology. Here we discuss how a relative newcomer among programming languages—Julia—is poised to meet the current and emerging demands in the computational biosciences and beyond. Speed, flexibility, a thriving package ecosystem and readability are major factors that make high-performance computing and data analysis available to an unprecedented degree. We highlight how Julia’s design is already enabling new ways of analyzing biological data and systems, and we provide a list of resources that can facilitate the transition into Julian computing.
UR - http://www.scopus.com/inward/record.url?scp=85151918702&partnerID=8YFLogxK
U2 - 10.1038/s41592-023-01832-z
DO - 10.1038/s41592-023-01832-z
M3 - Article
C2 - 37024649
AN - SCOPUS:85151918702
SN - 1548-7091
VL - 20
SP - 655
EP - 664
JO - Nature Methods
JF - Nature Methods
IS - 5
ER -