Human immunodeficiency virus-1 genome from patient with fever, Nepal

Eans Tara Tuladhar; Bimal Sharma Chalise; Binod Khadka; Mamta Tamang; Jenish Neupane; Shankar Poudel; Lindsay Droit; Kathie A. Mihindukulasuriya; Annie Elong Ngono; Yuba Nidhi Basaula; Sujan Shresta; David Wang; Krishna Das Manandhar

doi:10.1128/mra.00768-24

Human immunodeficiency virus-1 genome from patient with fever, Nepal

Eans Tara Tuladhar
, Bimal Sharma Chalise
, Binod Khadka
, Mamta Tamang
, Jenish Neupane
, Shankar Poudel
, Lindsay Droit
, Kathie A. Mihindukulasuriya
, Annie Elong Ngono
, Yuba Nidhi Basaula
, Sujan Shresta
, David Wang
, Krishna Das Manandhar

Research output: Contribution to journal › Article › peer-review

Abstract

A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient’s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48% nucleotide identity with an HIV-1 subtype C isolate from India.

Original language	English
Article number	e00768-24
Journal	Microbiology Resource Announcements
Volume	13
Issue number	11
DOIs	https://doi.org/10.1128/mra.00768-24
State	Published - Nov 2024

Keywords

HIV
WGS
fever of unknown origin

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10.1128/mra.00768-24

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Tuladhar, E. T., Chalise, B. S., Khadka, B., Tamang, M., Neupane, J., Poudel, S., Droit, L., Mihindukulasuriya, K. A., Ngono, A. E., Basaula, Y. N., Shresta, S., Wang, D., & Das Manandhar, K. (2024). Human immunodeficiency virus-1 genome from patient with fever, Nepal. Microbiology Resource Announcements, 13(11), Article e00768-24. https://doi.org/10.1128/mra.00768-24

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title = "Human immunodeficiency virus-1 genome from patient with fever, Nepal",

abstract = "A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient{\textquoteright}s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48\% nucleotide identity with an HIV-1 subtype C isolate from India.",

keywords = "HIV, WGS, fever of unknown origin",

author = "Tuladhar, \{Eans Tara\} and Chalise, \{Bimal Sharma\} and Binod Khadka and Mamta Tamang and Jenish Neupane and Shankar Poudel and Lindsay Droit and Mihindukulasuriya, \{Kathie A.\} and Ngono, \{Annie Elong\} and Basaula, \{Yuba Nidhi\} and Sujan Shresta and David Wang and \{Das Manandhar\}, Krishna",

note = "Publisher Copyright: Copyright {\textcopyright} 2024 Tuladhar et al.",

year = "2024",

month = nov,

doi = "10.1128/mra.00768-24",

language = "English",

volume = "13",

journal = "Microbiology Resource Announcements",

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T1 - Human immunodeficiency virus-1 genome from patient with fever, Nepal

AU - Tuladhar, Eans Tara

AU - Chalise, Bimal Sharma

AU - Khadka, Binod

AU - Tamang, Mamta

AU - Neupane, Jenish

AU - Poudel, Shankar

AU - Droit, Lindsay

AU - Mihindukulasuriya, Kathie A.

AU - Ngono, Annie Elong

AU - Basaula, Yuba Nidhi

AU - Shresta, Sujan

AU - Wang, David

AU - Das Manandhar, Krishna

PY - 2024/11

Y1 - 2024/11

N2 - A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient’s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48% nucleotide identity with an HIV-1 subtype C isolate from India.

AB - A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient’s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48% nucleotide identity with an HIV-1 subtype C isolate from India.

KW - HIV

KW - WGS

KW - fever of unknown origin

UR - https://www.scopus.com/pages/publications/85209543052

U2 - 10.1128/mra.00768-24

DO - 10.1128/mra.00768-24

M3 - Article

C2 - 39431871

AN - SCOPUS:85209543052

SN - 2576-098X

VL - 13

JO - Microbiology Resource Announcements

JF - Microbiology Resource Announcements

IS - 11

M1 - e00768-24

ER -

Human immunodeficiency virus-1 genome from patient with fever, Nepal

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Keywords

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