Human immunodeficiency virus-1 genome from patient with fever, Nepal

Eans Tara Tuladhar; Bimal Sharma Chalise; Binod Khadka; Mamta Tamang; Jenish Neupane; Shankar Poudel; Lindsay Droit; Kathie A. Mihindukulasuriya; Annie Elong Ngono; Yuba Nidhi Basaula; Sujan Shresta; David Wang; Krishna Das Manandhar

doi:10.1128/mra.00768-24

Human immunodeficiency virus-1 genome from patient with fever, Nepal

Eans Tara Tuladhar, Bimal Sharma Chalise, Binod Khadka, Mamta Tamang, Jenish Neupane, Shankar Poudel, Lindsay Droit, Kathie A. Mihindukulasuriya, Annie Elong Ngono, Yuba Nidhi Basaula, Sujan Shresta, David Wang, Krishna Das Manandhar

Research output: Contribution to journal › Article › peer-review

Abstract

A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient’s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48% nucleotide identity with an HIV-1 subtype C isolate from India.

Original language	English
Article number	e00768-24
Journal	Microbiology Resource Announcements
Volume	13
Issue number	11
DOIs	https://doi.org/10.1128/mra.00768-24
State	Published - Nov 2024

Keywords

fever of unknown origin
HIV
WGS

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10.1128/mra.00768-24

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Tuladhar, E. T., Chalise, B. S., Khadka, B., Tamang, M., Neupane, J., Poudel, S., Droit, L., Mihindukulasuriya, K. A., Ngono, A. E., Basaula, Y. N., Shresta, S., Wang, D., & Das Manandhar, K. (2024). Human immunodeficiency virus-1 genome from patient with fever, Nepal. Microbiology Resource Announcements, 13(11), Article e00768-24. https://doi.org/10.1128/mra.00768-24

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title = "Human immunodeficiency virus-1 genome from patient with fever, Nepal",

abstract = "A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient{\textquoteright}s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48% nucleotide identity with an HIV-1 subtype C isolate from India.",

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author = "Tuladhar, {Eans Tara} and Chalise, {Bimal Sharma} and Binod Khadka and Mamta Tamang and Jenish Neupane and Shankar Poudel and Lindsay Droit and Mihindukulasuriya, {Kathie A.} and Ngono, {Annie Elong} and Basaula, {Yuba Nidhi} and Sujan Shresta and David Wang and {Das Manandhar}, Krishna",

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year = "2024",

month = nov,

doi = "10.1128/mra.00768-24",

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journal = "Microbiology Resource Announcements",

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AU - Tuladhar, Eans Tara

AU - Chalise, Bimal Sharma

AU - Khadka, Binod

AU - Tamang, Mamta

AU - Neupane, Jenish

AU - Poudel, Shankar

AU - Droit, Lindsay

AU - Mihindukulasuriya, Kathie A.

AU - Ngono, Annie Elong

AU - Basaula, Yuba Nidhi

AU - Shresta, Sujan

AU - Wang, David

AU - Das Manandhar, Krishna

PY - 2024/11

Y1 - 2024/11

N2 - A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient’s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48% nucleotide identity with an HIV-1 subtype C isolate from India.

AB - A patient with fever presented to the referral infectious disease hospital in Kathmandu, Nepal. Metagenomic sequencing of the patient’s serum recovered a near-complete genome of human immunodeficiency virus-1 (HIV-1), distinct from previous HIV-1 genomes from Nepal in GenBank. It shared 92.48% nucleotide identity with an HIV-1 subtype C isolate from India.

KW - fever of unknown origin

KW - HIV

KW - WGS

UR - http://www.scopus.com/inward/record.url?scp=85209543052&partnerID=8YFLogxK

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DO - 10.1128/mra.00768-24

M3 - Article

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AN - SCOPUS:85209543052

SN - 2576-098X

VL - 13

JO - Microbiology Resource Announcements

JF - Microbiology Resource Announcements

IS - 11

M1 - e00768-24

ER -

Human immunodeficiency virus-1 genome from patient with fever, Nepal

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