GenVisR: Genomic Visualizations in R

Zachary L. Skidmore; Alex H. Wagner; Robert Lesurf; Katie M. Campbell; Jason Kunisaki; Obi L. Griffith; Malachi Griffith

doi:10.1093/bioinformatics/btw325

GenVisR: Genomic Visualizations in R

Zachary L. Skidmore, Alex H. Wagner, Robert Lesurf, Katie M. Campbell, Jason Kunisaki, Obi L. Griffith, Malachi Griffith

Research output: Contribution to journal › Article › peer-review

235 Scopus citations

Abstract

Visualizing and summarizing data from genomic studies continues to be a challenge. Here, we introduce the GenVisR package to addresses this challenge by providing highly customizable, publication-quality graphics focused on cohort level genome analyses. GenVisR provides a rapid and easy-to-use suite of genomic visualization tools, while maintaining a high degree of flexibility by leveraging the abilities of ggplot2 and Bioconductor. Availability and Implementation: GenVisR is an R package available via Bioconductor (https://bioconductor.org/packages/GenVisR) under GPLv3. Support is available via GitHub (https://github.com/griffithlab/GenVisR/issues) and the Bioconductor support website.

Original language	English
Pages (from-to)	3012-3014
Number of pages	3
Journal	Bioinformatics
Volume	32
Issue number	19
DOIs	https://doi.org/10.1093/bioinformatics/btw325
State	Published - Oct 1 2016

Access to Document

10.1093/bioinformatics/btw325

Cite this

@article{ff1acb03f0b9413a9a6649c397fe7e89,

title = "GenVisR: Genomic Visualizations in R",

abstract = "Visualizing and summarizing data from genomic studies continues to be a challenge. Here, we introduce the GenVisR package to addresses this challenge by providing highly customizable, publication-quality graphics focused on cohort level genome analyses. GenVisR provides a rapid and easy-to-use suite of genomic visualization tools, while maintaining a high degree of flexibility by leveraging the abilities of ggplot2 and Bioconductor. Availability and Implementation: GenVisR is an R package available via Bioconductor (https://bioconductor.org/packages/GenVisR) under GPLv3. Support is available via GitHub (https://github.com/griffithlab/GenVisR/issues) and the Bioconductor support website.",

author = "Skidmore, {Zachary L.} and Wagner, {Alex H.} and Robert Lesurf and Campbell, {Katie M.} and Jason Kunisaki and Griffith, {Obi L.} and Malachi Griffith",

note = "Publisher Copyright: {\textcopyright} 2016 The Author. Published by Oxford University Press.",

year = "2016",

month = oct,

day = "1",

doi = "10.1093/bioinformatics/btw325",

language = "English",

volume = "32",

pages = "3012--3014",

journal = "Bioinformatics",

issn = "1367-4803",

number = "19",

}

TY - JOUR

T1 - GenVisR

T2 - Genomic Visualizations in R

AU - Skidmore, Zachary L.

AU - Wagner, Alex H.

AU - Lesurf, Robert

AU - Campbell, Katie M.

AU - Kunisaki, Jason

AU - Griffith, Obi L.

AU - Griffith, Malachi

PY - 2016/10/1

Y1 - 2016/10/1

N2 - Visualizing and summarizing data from genomic studies continues to be a challenge. Here, we introduce the GenVisR package to addresses this challenge by providing highly customizable, publication-quality graphics focused on cohort level genome analyses. GenVisR provides a rapid and easy-to-use suite of genomic visualization tools, while maintaining a high degree of flexibility by leveraging the abilities of ggplot2 and Bioconductor. Availability and Implementation: GenVisR is an R package available via Bioconductor (https://bioconductor.org/packages/GenVisR) under GPLv3. Support is available via GitHub (https://github.com/griffithlab/GenVisR/issues) and the Bioconductor support website.

AB - Visualizing and summarizing data from genomic studies continues to be a challenge. Here, we introduce the GenVisR package to addresses this challenge by providing highly customizable, publication-quality graphics focused on cohort level genome analyses. GenVisR provides a rapid and easy-to-use suite of genomic visualization tools, while maintaining a high degree of flexibility by leveraging the abilities of ggplot2 and Bioconductor. Availability and Implementation: GenVisR is an R package available via Bioconductor (https://bioconductor.org/packages/GenVisR) under GPLv3. Support is available via GitHub (https://github.com/griffithlab/GenVisR/issues) and the Bioconductor support website.

UR - http://www.scopus.com/inward/record.url?scp=84989807021&partnerID=8YFLogxK

U2 - 10.1093/bioinformatics/btw325

DO - 10.1093/bioinformatics/btw325

M3 - Article

C2 - 27288499

AN - SCOPUS:84989807021

SN - 1367-4803

VL - 32

SP - 3012

EP - 3014

JO - Bioinformatics

JF - Bioinformatics

IS - 19

ER -

GenVisR: Genomic Visualizations in R

Abstract

Access to Document

Other files and links

Fingerprint

Cite this