TY - JOUR
T1 - Expanding the clinical history associated with syndromic Klippel-Feil
T2 - A unique case of comorbidity with medulloblastoma
AU - Schieffer, Kathleen M.
AU - Varga, Elizabeth
AU - Miller, Katherine E.
AU - Agarwal, Vibhuti
AU - Koboldt, Daniel C.
AU - Brennan, Patrick
AU - Kelly, Benjamin
AU - Dave-Wala, Ashita
AU - Pierson, Christopher R.
AU - Finlay, Jonathan L.
AU - AbdelBaki, Mohamed S.
AU - White, Peter
AU - Magrini, Vincent
AU - Wilson, Richard K.
AU - Mardis, Elaine R.
AU - Cottrell, Catherine E.
N1 - Funding Information:
We thank the patient and their family for participating in our translational research protocol and the University of California Santa Cruz Treehouse Childhood Cancer Initiative for generating and providing a publicly available pediatric cancer dataset for comparative analyses. We thank the Nationwide Foundation Pediatric Innovation Fund for generously supporting sequencing, data production and analysis.
Publisher Copyright:
© 2019 Elsevier Masson SAS
PY - 2019/8
Y1 - 2019/8
N2 - Klippel-Feil syndrome (KFS) is an exceedingly rare constitutional disorder in which a paucity of knowledge exists about the disease and its associated morbidity and mortality. We present a 4-year-old male with KFS, who notably was also diagnosed with large-cell anaplastic medulloblastoma. We evaluated the genetic basis of co-occurring KFS and medulloblastoma and the role of MYO18B as related to medulloblastoma. Constitutional and somatic variant and copy number analyses were performed from DNA-based exome studies, along with RNA-sequencing of tumor tissue, to elucidate the genetic etiology of the co-existing disease states. We identified novel constitutional compound heterozygous frameshift variants (NM_032608.5: p.Leu2257SerfsTer16 and p.Arg2220SerfsTer74) each encoding a premature stop of translation in MYO18B, consistent with a diagnosis of KFS. We did not identify any somatic variants of known relevance or disease-relevant therapeutic targets in the tumor. The somatic copy number profile was suggestive of Group 3γ medulloblastoma. Relative to pediatric brain tumors, medulloblastoma, particularly, Group 3, had increased gene expression of MYO18B. In summary, coexisting constitutional and somatic diagnoses in this patient enabled the elucidation of the genetic etiology of KFS and provided support for the role of MYO18B in tumor suppression.
AB - Klippel-Feil syndrome (KFS) is an exceedingly rare constitutional disorder in which a paucity of knowledge exists about the disease and its associated morbidity and mortality. We present a 4-year-old male with KFS, who notably was also diagnosed with large-cell anaplastic medulloblastoma. We evaluated the genetic basis of co-occurring KFS and medulloblastoma and the role of MYO18B as related to medulloblastoma. Constitutional and somatic variant and copy number analyses were performed from DNA-based exome studies, along with RNA-sequencing of tumor tissue, to elucidate the genetic etiology of the co-existing disease states. We identified novel constitutional compound heterozygous frameshift variants (NM_032608.5: p.Leu2257SerfsTer16 and p.Arg2220SerfsTer74) each encoding a premature stop of translation in MYO18B, consistent with a diagnosis of KFS. We did not identify any somatic variants of known relevance or disease-relevant therapeutic targets in the tumor. The somatic copy number profile was suggestive of Group 3γ medulloblastoma. Relative to pediatric brain tumors, medulloblastoma, particularly, Group 3, had increased gene expression of MYO18B. In summary, coexisting constitutional and somatic diagnoses in this patient enabled the elucidation of the genetic etiology of KFS and provided support for the role of MYO18B in tumor suppression.
KW - Brain cancer
KW - Constitutional disease
KW - Exome sequencing
KW - MYO18B
KW - Pediatric
UR - http://www.scopus.com/inward/record.url?scp=85067209574&partnerID=8YFLogxK
U2 - 10.1016/j.ejmg.2019.103701
DO - 10.1016/j.ejmg.2019.103701
M3 - Article
C2 - 31195167
AN - SCOPUS:85067209574
SN - 1769-7212
VL - 62
JO - European Journal of Medical Genetics
JF - European Journal of Medical Genetics
IS - 8
M1 - 103701
ER -