ENCODE whole-genome data in the UCSC Genome Browser

Kate R. Rosenbloom, Timothy R. Dreszer, Michael Pheasant, Galt P. Barber, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Ting Wang, Angie S. Hinrichs, Ann S. Zweig, Pauline A. Fujita, Katrina Learned, Brooke Rhead, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent

Research output: Contribution to journalArticlepeer-review

196 Scopus citations

Abstract

The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing a comprehensive catalog of functional elements. The ENCODE Data Coordination Center at The University of California, Santa Cruz (UCSC) is the primary repository for experimental results generated by ENCODE investigators. These results are captured in the UCSC Genome Bioinformatics database and download server for visualization and data mining via the UCSC Genome Browser and companion tools (Rhead et al. The UCSC Genome Browser Database: update 2010, in this issue). The ENCODE web portal at UCSC (http://encodeproject.org or http://genome.ucsc.edu/ENCODE) provides information about the ENCODE data and convenient links for access.

Original languageEnglish
Article numbergkp961
Pages (from-to)D620-D625
JournalNucleic acids research
Volume38
Issue numberSUPPL.1
DOIs
StatePublished - Nov 17 2009

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