Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research

  • Austin Chou
  • , Abel Torres-Espin
  • , J. Russell Huie
  • , Karen Krukowski
  • , Sangmi Lee
  • , Amber Nolan
  • , Caroline Guglielmetti
  • , Bridget E. Hawkins
  • , Myriam M. Chaumeil
  • , Geoffrey T. Manley
  • , Michael S. Beattie
  • , Jacqueline C. Bresnahan
  • , Maryann E. Martone
  • , Jeffrey S. Grethe
  • , Susanna Rosi
  • , Adam R. Ferguson

Research output: Contribution to journalArticlepeer-review

19 Scopus citations

Abstract

Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI (ODC-TBI) is a community-centered repository emphasizing Findable, Accessible, Interoperable, and Reusable data sharing and publication with persistent identifiers. Importantly, the ODC-TBI implements data sharing of individual subject data, enabling pooling for high-sample-size, feature-rich data sets for machine learning analytics. We demonstrate pooled ODC-TBI data analyses, starting with descriptive analytics of subject-level data from 11 previously published articles (N = 1250 subjects) representing six distinct pre-clinical TBI models. Second, we perform unsupervised machine learning on multi-cohort data to identify persistent inflammatory patterns across different studies, improving experimental sensitivity for pro- versus anti-inflammation effects. As funders and journals increasingly mandate open data practices, ODC-TBI will create new scientific opportunities for researchers and facilitate multi-data-set, multi-dimensional analytics toward effective translation.

Original languageEnglish
Pages (from-to)139-157
Number of pages19
JournalNeurotrauma Reports
Volume3
Issue number1
DOIs
StatePublished - Apr 1 2022

Keywords

  • FAIR principles
  • Open Data Commons
  • data sharing
  • multi-variate analysis
  • principal component analysis
  • traumatic brain Injury

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