TY - JOUR
T1 - Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research
AU - Chou, Austin
AU - Torres-Espin, Abel
AU - Huie, J. Russell
AU - Krukowski, Karen
AU - Lee, Sangmi
AU - Nolan, Amber
AU - Guglielmetti, Caroline
AU - Hawkins, Bridget E.
AU - Chaumeil, Myriam M.
AU - Manley, Geoffrey T.
AU - Beattie, Michael S.
AU - Bresnahan, Jacqueline C.
AU - Martone, Maryann E.
AU - Grethe, Jeffrey S.
AU - Rosi, Susanna
AU - Ferguson, Adam R.
N1 - Publisher Copyright:
© Austin Chou et al., 2022; Published by Mary Ann Liebert, Inc. 2022.
PY - 2022/4/1
Y1 - 2022/4/1
N2 - Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI (ODC-TBI) is a community-centered repository emphasizing Findable, Accessible, Interoperable, and Reusable data sharing and publication with persistent identifiers. Importantly, the ODC-TBI implements data sharing of individual subject data, enabling pooling for high-sample-size, feature-rich data sets for machine learning analytics. We demonstrate pooled ODC-TBI data analyses, starting with descriptive analytics of subject-level data from 11 previously published articles (N = 1250 subjects) representing six distinct pre-clinical TBI models. Second, we perform unsupervised machine learning on multi-cohort data to identify persistent inflammatory patterns across different studies, improving experimental sensitivity for pro- versus anti-inflammation effects. As funders and journals increasingly mandate open data practices, ODC-TBI will create new scientific opportunities for researchers and facilitate multi-data-set, multi-dimensional analytics toward effective translation.
AB - Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI (ODC-TBI) is a community-centered repository emphasizing Findable, Accessible, Interoperable, and Reusable data sharing and publication with persistent identifiers. Importantly, the ODC-TBI implements data sharing of individual subject data, enabling pooling for high-sample-size, feature-rich data sets for machine learning analytics. We demonstrate pooled ODC-TBI data analyses, starting with descriptive analytics of subject-level data from 11 previously published articles (N = 1250 subjects) representing six distinct pre-clinical TBI models. Second, we perform unsupervised machine learning on multi-cohort data to identify persistent inflammatory patterns across different studies, improving experimental sensitivity for pro- versus anti-inflammation effects. As funders and journals increasingly mandate open data practices, ODC-TBI will create new scientific opportunities for researchers and facilitate multi-data-set, multi-dimensional analytics toward effective translation.
KW - FAIR principles
KW - Open Data Commons
KW - data sharing
KW - multi-variate analysis
KW - principal component analysis
KW - traumatic brain Injury
UR - http://www.scopus.com/inward/record.url?scp=85160805472&partnerID=8YFLogxK
U2 - 10.1089/neur.2021.0061
DO - 10.1089/neur.2021.0061
M3 - Article
C2 - 35403104
AN - SCOPUS:85160805472
SN - 2689-288X
VL - 3
SP - 139
EP - 157
JO - Neurotrauma Reports
JF - Neurotrauma Reports
IS - 1
ER -