TY - JOUR
T1 - Differential solvation of intrinsically disordered linkers drives the formation of spatially organized droplets in ternary systems of linear multivalent proteins
AU - Harmon, Tyler S.
AU - Holehouse, Alex S.
AU - Pappu, Rohit V.
N1 - Funding Information:
We thank members of the Pappu lab and our colleagues/collaborators including Clifford Brangwynne, Anthony Hyman, Michael Rosen, and Geraldine Seydoux for helpful discussions. We acknowledge financial support through funds from the St. Jude Research Collaborative on Membraneless Organelles (RVP), the Human Frontier Science Program RGP0034/2017 (RVP), the US National Science Foundation through grant MCB1614766 (RVP), Washington University’s Center for Biological Systems Engineering (TSH), and the Max Planck Society (TSH).
Publisher Copyright:
© 2018 The Author(s). Published by IOP Publishing Ltd on behalf of Deutsche Physikalische Gesellschaft.
PY - 2018/4
Y1 - 2018/4
N2 - Intracellular biomolecular condensates are membraneless organelles that encompass large numbers of multivalent protein and nucleic acid molecules. The bodies assemble via a combination of liquid-liquid phase separation and gelation. A majority of condensates included multiple components and show multilayered organization as opposed to being well-mixed unitary liquids. Here, we put forward a simple thermodynamic framework to describe the emergence of spatially organized droplets in multicomponent systems comprising of linear multivalent polymers also known as associative polymers. These polymers, which mimic proteins and/or RNA have the architecture of domains or motifs known as stickers that are interspersed by flexible spacers known as linkers. Using a minimalist numerical model for a four-component system, we have identified features of linear multivalent molecules that are necessary and sufficient for generating spatially organized droplets. We show that differences in sequence-specific effective solvation volumes of disordered linkers between interaction domains enable the formation of spatially organized droplets. Molecules with linkers that are preferentially solvated are driven to the interface with the bulk solvent, whereas molecules that have linkers with negligible effective solvation volumes form cores in the core-shell architectures that emerge in the minimalist four-component systems. Our modeling has relevance for understanding the physical determinants of spatially organized membraneless organelles.
AB - Intracellular biomolecular condensates are membraneless organelles that encompass large numbers of multivalent protein and nucleic acid molecules. The bodies assemble via a combination of liquid-liquid phase separation and gelation. A majority of condensates included multiple components and show multilayered organization as opposed to being well-mixed unitary liquids. Here, we put forward a simple thermodynamic framework to describe the emergence of spatially organized droplets in multicomponent systems comprising of linear multivalent polymers also known as associative polymers. These polymers, which mimic proteins and/or RNA have the architecture of domains or motifs known as stickers that are interspersed by flexible spacers known as linkers. Using a minimalist numerical model for a four-component system, we have identified features of linear multivalent molecules that are necessary and sufficient for generating spatially organized droplets. We show that differences in sequence-specific effective solvation volumes of disordered linkers between interaction domains enable the formation of spatially organized droplets. Molecules with linkers that are preferentially solvated are driven to the interface with the bulk solvent, whereas molecules that have linkers with negligible effective solvation volumes form cores in the core-shell architectures that emerge in the minimalist four-component systems. Our modeling has relevance for understanding the physical determinants of spatially organized membraneless organelles.
KW - Biomolecular condensates
KW - Intrinsically disordered linkers
KW - Lattice model
KW - Multiphase equilibria
KW - Spatially organized dropelts
UR - http://www.scopus.com/inward/record.url?scp=85046652768&partnerID=8YFLogxK
U2 - 10.1088/1367-2630/aab8d9
DO - 10.1088/1367-2630/aab8d9
M3 - Article
AN - SCOPUS:85046652768
SN - 1367-2630
VL - 20
JO - New Journal of Physics
JF - New Journal of Physics
IS - 4
M1 - 045002
ER -