Designing Sequence to Control Protein Function in an EF-Hand Protein

Christopher G. Bunick, Melanie R. Nelson, Sheryll Mangahas, Michael J. Hunter, Jonathan H. Sheehan, Laura S. Mizoue, Gerard J. Bunick, Walter J. Chazin

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29 Scopus citations

Abstract

The extent of conformational change that calcium binding induces in EF-hand proteins is a key biochemical property specifying Ca2+ sensor versus signal modulator function. To understand how differences in amino acid sequence lead to differences in the response to Ca2+ binding, comparative analyses of sequence and structures, combined with model building, were used to develop hypotheses about which amino acid residues control Ca 2+-induced conformational changes. These results were used to generate a first design of calbindomodulin (CBM-1), a calbindin D9k re-engineered with 15 mutations to respond to Ca2+ binding with a conformational change similar to that of calmodulin. The gene for CBM-1 was synthesized, and the protein was expressed and purified. Remarkably, this protein did not exhibit any non-native-like molten globule properties despite the large number of mutations and the nonconservative nature of some of them. Ca2+-induced changes in CD Intensity and in the binding of the hydrophobic probe, ANS, implied that CBM-1 does undergo Ca2+ sensorlike conformational changes. The X-ray crystal structure of Ca 2+-CBM-1 determined at 1.44 Å resolution reveals the anticipated increase in hydrophobic surface area relative to the wild-type protein. A nascent calmodulin-like hydrophobic docking surface was also found, though it is occluded by the inter-EF-hand loop. The results from this first calbindomodulin design are discussed in terms of progress toward understanding the relationships between amino acid sequence, protein structure, and protein function for EF-hand CaBPs, as well as the additional mutations for the next CBM design.

Original languageEnglish
Pages (from-to)5990-5998
Number of pages9
JournalJournal of the American Chemical Society
Volume126
Issue number19
DOIs
StatePublished - May 19 2004

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    Bunick, C. G., Nelson, M. R., Mangahas, S., Hunter, M. J., Sheehan, J. H., Mizoue, L. S., Bunick, G. J., & Chazin, W. J. (2004). Designing Sequence to Control Protein Function in an EF-Hand Protein. Journal of the American Chemical Society, 126(19), 5990-5998. https://doi.org/10.1021/ja0397456