TY - JOUR
T1 - Designing machine learning workflows with an application to topological data analysis
AU - Cawi, Eric
AU - la Rosa, Patricio S.
AU - Nehorai, Arye
N1 - Funding Information:
Fellowship Program, nsf.gov, The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. P.S. La Rosa is supported by Bayer Company in St. Louis, MO. The funder provided support in the form of for author P.S. La Rosa, but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. The specific roles of this author are articulated in the “author contributions” section.
Publisher Copyright:
© 2019 Cawi et al. This
PY - 2019/12/1
Y1 - 2019/12/1
N2 - In this paper we define the concept of the Machine Learning Morphism (MLM) as a fundamental building block to express operations performed in machine learning such as data preprocessing, feature extraction, and model training. Inspired by statistical learning, MLMs are morphisms whose parameters are minimized via a risk function. We explore operations such as composition of MLMs and when sets of MLMs form a vector space. These operations are used to build a machine learning workflow from data preprocessing to final task completion. We examine the Mapper Algorithm from Topological Data Analysis as an MLM, and build several workflows for binary classification incorporating Mapper on Hospital Readmissions and Credit Evaluation datasets. The advantage of this framework lies in the ability to easily build, organize, and compare multiple workflows, and allows joint optimization of parameters across multiple steps in an application.
AB - In this paper we define the concept of the Machine Learning Morphism (MLM) as a fundamental building block to express operations performed in machine learning such as data preprocessing, feature extraction, and model training. Inspired by statistical learning, MLMs are morphisms whose parameters are minimized via a risk function. We explore operations such as composition of MLMs and when sets of MLMs form a vector space. These operations are used to build a machine learning workflow from data preprocessing to final task completion. We examine the Mapper Algorithm from Topological Data Analysis as an MLM, and build several workflows for binary classification incorporating Mapper on Hospital Readmissions and Credit Evaluation datasets. The advantage of this framework lies in the ability to easily build, organize, and compare multiple workflows, and allows joint optimization of parameters across multiple steps in an application.
UR - http://www.scopus.com/inward/record.url?scp=85075779827&partnerID=8YFLogxK
U2 - 10.1371/journal.pone.0225577
DO - 10.1371/journal.pone.0225577
M3 - Article
C2 - 31790458
AN - SCOPUS:85075779827
SN - 1932-6203
VL - 14
JO - PLoS ONE
JF - PLoS ONE
IS - 12
M1 - e0225577
ER -