Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates

Allison R. Eberly; Connor J. Beebout; Ching Man Carmen Tong; Gerald T. Van Horn; Hamilton D. Green; Madison J. Fitzgerald; Shuvro De; Emily K. Apple; Alexandra C. Schrimpe-Rutledge; Simona G. Codreanu; Stacy D. Sherrod; John A. McLean; Douglass B. Clayton; Charles W. Stratton; Jonathan E. Schmitz; Maria Hadjifrangiskou

doi:10.1016/j.dib.2020.105811

Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates

Allison R. Eberly, Connor J. Beebout, Ching Man Carmen Tong, Gerald T. Van Horn, Hamilton D. Green, Madison J. Fitzgerald, Shuvro De, Emily K. Apple, Alexandra C. Schrimpe-Rutledge, Simona G. Codreanu, Stacy D. Sherrod, John A. McLean, Douglass B. Clayton, Charles W. Stratton, Jonathan E. Schmitz, Maria Hadjifrangiskou

Research output: Contribution to journal › Article › peer-review

8 Scopus citations

Abstract

This article provides a reusable dataset describing detailed phenotypic and associated clinical parameters in n=303 clinical isolates of urinary Escherichia coli collected at Vanderbilt University Medical Center. De-identified clinical data collected with each isolate are detailed here and correlated to biofilm abundance and metabolomics data. Biofilm-abundance data were collected for each isolate under different in vitro conditions along with datasets quantifying biofilm abundance of each isolate under different conditions. Metabolomics data were collected from a subset of bacterial strains isolated from uncomplicated cases of cystitis or cases with no apparent symptoms accompanying colonization. For more insight, please see “Defining a Molecular Signature for Uropathogenic versus Urocolonizing Escherichia coli: The Status of the Field and New Clinical Opportunities” [1].

Original language	English
Article number	105811
Journal	Data in Brief
Volume	31
DOIs	https://doi.org/10.1016/j.dib.2020.105811
State	Published - Aug 2020

Keywords

Asymptomatic bacteriuria
Biofilm
Cystitis
Metabolomics
Urinary tract infection
Uropathogenic Escherichia coli

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10.1016/j.dib.2020.105811

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Eberly, A. R., Beebout, C. J., Tong, C. M. C., Van Horn, G. T., Green, H. D., Fitzgerald, M. J., De, S., Apple, E. K., Schrimpe-Rutledge, A. C., Codreanu, S. G., Sherrod, S. D., McLean, J. A., Clayton, D. B., Stratton, C. W., Schmitz, J. E., & Hadjifrangiskou, M. (2020). Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates. Data in Brief, 31, Article 105811. https://doi.org/10.1016/j.dib.2020.105811

@article{21d159386c6741caba29b6f5527e9c45,

title = "Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates",

abstract = "This article provides a reusable dataset describing detailed phenotypic and associated clinical parameters in n=303 clinical isolates of urinary Escherichia coli collected at Vanderbilt University Medical Center. De-identified clinical data collected with each isolate are detailed here and correlated to biofilm abundance and metabolomics data. Biofilm-abundance data were collected for each isolate under different in vitro conditions along with datasets quantifying biofilm abundance of each isolate under different conditions. Metabolomics data were collected from a subset of bacterial strains isolated from uncomplicated cases of cystitis or cases with no apparent symptoms accompanying colonization. For more insight, please see “Defining a Molecular Signature for Uropathogenic versus Urocolonizing Escherichia coli: The Status of the Field and New Clinical Opportunities” [1].",

keywords = "Asymptomatic bacteriuria, Biofilm, Cystitis, Metabolomics, Urinary tract infection, Uropathogenic Escherichia coli",

author = "Eberly, {Allison R.} and Beebout, {Connor J.} and Tong, {Ching Man Carmen} and {Van Horn}, {Gerald T.} and Green, {Hamilton D.} and Fitzgerald, {Madison J.} and Shuvro De and Apple, {Emily K.} and Schrimpe-Rutledge, {Alexandra C.} and Codreanu, {Simona G.} and Sherrod, {Stacy D.} and McLean, {John A.} and Clayton, {Douglass B.} and Stratton, {Charles W.} and Schmitz, {Jonathan E.} and Maria Hadjifrangiskou",

note = "Publisher Copyright: {\textcopyright} 2020",

year = "2020",

month = aug,

doi = "10.1016/j.dib.2020.105811",

language = "English",

volume = "31",

journal = "Data in Brief",

issn = "2352-3409",

}

Eberly, AR, Beebout, CJ, Tong, CMC, Van Horn, GT, Green, HD, Fitzgerald, MJ, De, S, Apple, EK, Schrimpe-Rutledge, AC, Codreanu, SG, Sherrod, SD, McLean, JA, Clayton, DB, Stratton, CW, Schmitz, JE & Hadjifrangiskou, M 2020, 'Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates', Data in Brief, vol. 31, 105811. https://doi.org/10.1016/j.dib.2020.105811

TY - JOUR

T1 - Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates

AU - Eberly, Allison R.

AU - Beebout, Connor J.

AU - Tong, Ching Man Carmen

AU - Van Horn, Gerald T.

AU - Green, Hamilton D.

AU - Fitzgerald, Madison J.

AU - De, Shuvro

AU - Apple, Emily K.

AU - Schrimpe-Rutledge, Alexandra C.

AU - Codreanu, Simona G.

AU - Sherrod, Stacy D.

AU - McLean, John A.

AU - Clayton, Douglass B.

AU - Stratton, Charles W.

AU - Schmitz, Jonathan E.

AU - Hadjifrangiskou, Maria

PY - 2020/8

Y1 - 2020/8

N2 - This article provides a reusable dataset describing detailed phenotypic and associated clinical parameters in n=303 clinical isolates of urinary Escherichia coli collected at Vanderbilt University Medical Center. De-identified clinical data collected with each isolate are detailed here and correlated to biofilm abundance and metabolomics data. Biofilm-abundance data were collected for each isolate under different in vitro conditions along with datasets quantifying biofilm abundance of each isolate under different conditions. Metabolomics data were collected from a subset of bacterial strains isolated from uncomplicated cases of cystitis or cases with no apparent symptoms accompanying colonization. For more insight, please see “Defining a Molecular Signature for Uropathogenic versus Urocolonizing Escherichia coli: The Status of the Field and New Clinical Opportunities” [1].

AB - This article provides a reusable dataset describing detailed phenotypic and associated clinical parameters in n=303 clinical isolates of urinary Escherichia coli collected at Vanderbilt University Medical Center. De-identified clinical data collected with each isolate are detailed here and correlated to biofilm abundance and metabolomics data. Biofilm-abundance data were collected for each isolate under different in vitro conditions along with datasets quantifying biofilm abundance of each isolate under different conditions. Metabolomics data were collected from a subset of bacterial strains isolated from uncomplicated cases of cystitis or cases with no apparent symptoms accompanying colonization. For more insight, please see “Defining a Molecular Signature for Uropathogenic versus Urocolonizing Escherichia coli: The Status of the Field and New Clinical Opportunities” [1].

KW - Asymptomatic bacteriuria

KW - Biofilm

KW - Cystitis

KW - Metabolomics

KW - Urinary tract infection

KW - Uropathogenic Escherichia coli

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U2 - 10.1016/j.dib.2020.105811

DO - 10.1016/j.dib.2020.105811

M3 - Article

AN - SCOPUS:85086158105

SN - 2352-3409

VL - 31

JO - Data in Brief

JF - Data in Brief

M1 - 105811

ER -

Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates

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Keywords

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