TY - JOUR
T1 - BreakPoint Surveyor
T2 - A pipeline for structural variant visualization
AU - Wyczalkowski, Matthew A.
AU - Wylie, Kristine M.
AU - Cao, Song
AU - Mclellan, Michael D.
AU - Flynn, Jennifer
AU - Huang, Mo
AU - Ye, Kai
AU - Fan, Xian
AU - Chen, Ken
AU - Wendl, Michael C.
AU - Ding, Li
N1 - Funding Information:
This work was supported by the National Cancer Institute [R01CA178383, R01CA180006, 1U24CA211006-01, and 1U24CA210972-01 to L.D., R01CA172652 to K.C.]; and National Human Genome Research Institute [U01HG006517 to L.D.].
PY - 2017/10/1
Y1 - 2017/10/1
N2 - Summary BreakPoint Surveyor (BPS) is a computational pipeline for the discovery, characterization, and visualization of complex genomic rearrangements, such as viral genome integration, in paired-end sequence data. BPS facilitates interpretation of structural variants by merging structural variant breakpoint predictions, gene exon structure, read depth, and RNA-sequencing expression into a single comprehensive figure.
AB - Summary BreakPoint Surveyor (BPS) is a computational pipeline for the discovery, characterization, and visualization of complex genomic rearrangements, such as viral genome integration, in paired-end sequence data. BPS facilitates interpretation of structural variants by merging structural variant breakpoint predictions, gene exon structure, read depth, and RNA-sequencing expression into a single comprehensive figure.
UR - http://www.scopus.com/inward/record.url?scp=85030711372&partnerID=8YFLogxK
U2 - 10.1093/bioinformatics/btx362
DO - 10.1093/bioinformatics/btx362
M3 - Article
C2 - 28582538
AN - SCOPUS:85030711372
SN - 1367-4803
VL - 33
SP - 3121
EP - 3122
JO - Bioinformatics
JF - Bioinformatics
IS - 19
ER -