@article{62d9446107944aeeb9740661a9f7407d,
title = "Breakfusion: Targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data",
abstract = "Despite recent progress, computational tools that identify gene fusions from next-generation whole transcriptome sequencing data are often limited in accuracy and scalability. Here, we present a software package, BreakFusion that combines the strength of reference alignment followed by read-pair analysis and de novo assembly to achieve a good balance in sensitivity, specificity and computational efficiency.",
author = "Ken Chen and Wallis, \{John W.\} and Cyriac Kandoth and Kalicki-veizer, \{Joelle M.\} and Mungall, \{Karen L.\} and Mungall, \{Andrew J.\} and Jones, \{Steven J.\} and Marra, \{Marco A.\} and Ley, \{Timothy J.\} and Mardis, \{Elaine R.\} and Wilson, \{Richard K.\} and Weinstein, \{John N.\} and Li Ding",
note = "Funding Information: Funding: The Cancer Center Support Grant from NCI (P30 CA016672 to UT MD Anderson); Center for Large-Scale Genome Sequencing and Analysis from NHGRI (U54 HG003079 to R.K.W); Structural Genomic Variation analysis for the 1000 Genome project from NHGRI (U01 HG005209 to L.C.)",
year = "2012",
month = jul,
doi = "10.1093/bioinformatics/bts272",
language = "English",
volume = "28",
pages = "1923--1924",
journal = "Bioinformatics",
issn = "1367-4803",
number = "14",
}