TY - JOUR
T1 - BglBrick vectors and datasheets
T2 - A synthetic biology platform for gene expression
AU - Lee, Taek S.
AU - Krupa, Rachel A.
AU - Zhang, Fuzhong
AU - Hajimorad, Meghdad
AU - Holtz, William J.
AU - Prasad, Nilu
AU - Lee, Sung K.
AU - Keasling, Jay D.
N1 - Funding Information:
We thank Nathan Hillson, Harry Beller (JBEI), and Seth Karten (LBNL) for helpful comments on the manuscript and Timothy Ham (JBEI) for JBEI registry works. This work was funded in part by the DOE Joint BioEnergy Institute (http://www.jbei.org) supported by the U. S. Department of Energy, Office of Science, Office of Biological and Environmental Research, through contract DE-AC02-05CH11231 between Lawrence Berkeley National Laboratory and the U. S. Department of Energy and in part by the Synthetic Biology Engineering Research Center, which is funded by National Science Foundation through Award No. 0540879. FZ is funded by NSERC Canada.
PY - 2011/9/20
Y1 - 2011/9/20
N2 - Background: As engineered biological systems become more complex, it is increasingly common to express multiple operons from different plasmids and inducible expression systems within a single host cell. Optimizing such systems often requires screening combinations of origins of replication, expression systems, and antibiotic markers. This procedure is hampered by a lack of quantitative data on how these components behave when more than one origin of replication or expression system are used simultaneously. Additionally, this process can be time consuming as it often requires the creation of new vectors or cloning into existing but disparate vectors.Results: Here, we report the development and characterization of a library of expression vectors compatible with the BglBrick standard (BBF RFC 21). We have designed and constructed 96 BglBrick-compatible plasmids with a combination of replication origins, antibiotic resistance genes, and inducible promoters. These plasmids were characterized over a range of inducer concentrations, in the presence of non-cognate inducer molecules, and with several growth media, and their characteristics were documented in a standard format datasheet. A three plasmid system was used to investigate the impact of multiple origins of replication on plasmid copy number.Conclusions: The standardized collection of vectors presented here allows the user to rapidly construct and test the expression of genes with various combinations of promoter strength, inducible expression system, copy number, and antibiotic resistance. The quantitative datasheets created for these vectors will increase the predictability of gene expression, especially when multiple plasmids and inducers are utilized.
AB - Background: As engineered biological systems become more complex, it is increasingly common to express multiple operons from different plasmids and inducible expression systems within a single host cell. Optimizing such systems often requires screening combinations of origins of replication, expression systems, and antibiotic markers. This procedure is hampered by a lack of quantitative data on how these components behave when more than one origin of replication or expression system are used simultaneously. Additionally, this process can be time consuming as it often requires the creation of new vectors or cloning into existing but disparate vectors.Results: Here, we report the development and characterization of a library of expression vectors compatible with the BglBrick standard (BBF RFC 21). We have designed and constructed 96 BglBrick-compatible plasmids with a combination of replication origins, antibiotic resistance genes, and inducible promoters. These plasmids were characterized over a range of inducer concentrations, in the presence of non-cognate inducer molecules, and with several growth media, and their characteristics were documented in a standard format datasheet. A three plasmid system was used to investigate the impact of multiple origins of replication on plasmid copy number.Conclusions: The standardized collection of vectors presented here allows the user to rapidly construct and test the expression of genes with various combinations of promoter strength, inducible expression system, copy number, and antibiotic resistance. The quantitative datasheets created for these vectors will increase the predictability of gene expression, especially when multiple plasmids and inducers are utilized.
UR - http://www.scopus.com/inward/record.url?scp=80053175916&partnerID=8YFLogxK
U2 - 10.1186/1754-1611-5-12
DO - 10.1186/1754-1611-5-12
M3 - Article
AN - SCOPUS:80053175916
SN - 1754-1611
VL - 5
JO - Journal of Biological Engineering
JF - Journal of Biological Engineering
M1 - 12
ER -