ASRP: The Arabidopsis Small RNA Project Database

Adam M. Gustafson; Edwards Allen; Scott Givan; Daniel Smith; James C. Carrington; Kristin D. Kasschau

doi:10.1093/nar/gki127

ASRP: The Arabidopsis Small RNA Project Database

Adam M. Gustafson, Edwards Allen, Scott Givan, Daniel Smith, James C. Carrington, Kristin D. Kasschau

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178 Scopus citations

Abstract

Eukaryotes produce functionally diverse classes of small RNAs (20-25 nt). These include microRNAs (miRNAs), which act as regulatory factors during growth and development, and short-interfering RNAs (siRNAs), which function in several epigenetic and post-transcriptional silencing systems. The Arabidopsis Small RNA Project (ASRP) seeks to characterize and functionally analyze the major classes of endogenous small RNAs in plants. The ASRP database provides a repository for sequences of small RNAs cloned from various Arabidopsis genotypes and tissues. Version 3.0 of the database contains 1920 unique sequences, with tools to assist in miRNA and siRNA identification and analysis. The comprehensive database is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu.

Original language	English
Pages (from-to)	D637-D640
Journal	Nucleic acids research
Volume	33
Issue number	DATABASE ISS.
DOIs	https://doi.org/10.1093/nar/gki127
State	Published - Jan 1 2005

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abstract = "Eukaryotes produce functionally diverse classes of small RNAs (20-25 nt). These include microRNAs (miRNAs), which act as regulatory factors during growth and development, and short-interfering RNAs (siRNAs), which function in several epigenetic and post-transcriptional silencing systems. The Arabidopsis Small RNA Project (ASRP) seeks to characterize and functionally analyze the major classes of endogenous small RNAs in plants. The ASRP database provides a repository for sequences of small RNAs cloned from various Arabidopsis genotypes and tissues. Version 3.0 of the database contains 1920 unique sequences, with tools to assist in miRNA and siRNA identification and analysis. The comprehensive database is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu.",

author = "Gustafson, {Adam M.} and Edwards Allen and Scott Givan and Daniel Smith and Carrington, {James C.} and Kasschau, {Kristin D.}",

note = "Funding Information: We thank Christopher M. Sullivan for developing the infrastructure for the computing cluster and compiling the software technologies used for the database and Heather Fitzgerald for critical reading of the manuscript. The Arabidopsis small RNA project database is supported by a 2010 project grant from the National Science Foundation (MCB-0209836).",

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AU - Givan, Scott

AU - Smith, Daniel

AU - Carrington, James C.

AU - Kasschau, Kristin D.

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ASRP: The Arabidopsis Small RNA Project Database

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