ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion

the ALLFTD consortium; Anne Fagan

doi:10.1038/s41592-022-01458-7

ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion

the ALLFTD consortium, Anne Fagan

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

Arterial spin labeled (ASL) magnetic resonance imaging (MRI) is the primary method for noninvasively measuring regional brain perfusion in humans. We introduce ASLPrep, a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data.

Original language	English
Pages (from-to)	683-686
Number of pages	4
Journal	Nature Methods
Volume	19
Issue number	6
DOIs	https://doi.org/10.1038/s41592-022-01458-7
State	Published - Jun 2022

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10.1038/s41592-022-01458-7

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@article{9919ea4bb63a4a9cb4926c8e75607416,

title = "ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion",

abstract = "Arterial spin labeled (ASL) magnetic resonance imaging (MRI) is the primary method for noninvasively measuring regional brain perfusion in humans. We introduce ASLPrep, a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data.",

author = "{the ALLFTD consortium} and Azeez Adebimpe and Maxwell Bertolero and Sudipto Dolui and Matthew Cieslak and Kristin Murtha and Baller, {Erica B.} and Bradley Boeve and Adam Boxer and Butler, {Ellyn R.} and Phil Cook and Stan Colcombe and Sydney Covitz and Christos Davatzikos and Davila, {Diego G.} and Elliott, {Mark A.} and Flounders, {Matthew W.} and Franco, {Alexandre R.} and Gur, {Raquel E.} and Gur, {Ruben C.} and Basma Jaber and Corey McMillian and Liana Apostolova and Brian Appleby and Sami Barmada and Yvette Bordelon and Hugo Botha and Boxer, {Adam L.} and Andrea Bozoki and Danielle Brushaber and David Clark and Giovanni Coppola and Ryan Darby and Dennis Dickson and Kimiko Domoto-Reilly and Kelley Faber and Anne Fagan and Fields, {Julie A.} and Tatiana Foroud and Forsberg, {Leah K.} and Daniel Geschwind and Jill Goldman and Galasko, {Douglas R.} and Ralitza Gavrilova and Tania Gendron and Jonathon Graff-Radford and Neill Graff-Radford and Grant, {Ian M.} and Murray Grossman and Matthew Hall and Eric Huang and Heuer, {Hilary W.} and Hsiung, {Ging Yuek Robin} and Huey, {Edward D.} and David Irwin and Jones, {David T.} and Kejal Kantarci and Daniel Kaufer and Diana Kerwin and David Knopman and John Kornak and Joel Kramer and Walter Kremers and Maria Lapid and Lago, {Argentina Lario} and Gabriel Leger and Peter Ljubenkov and Irene Litvan and Diane Lucente and Mackenzie, {Ian R.} and Masdeu, {Joseph C.} and Scott McGinnis and Mario Mendez and Carly Mester and Miller, {Bruce L.} and Chiadi Onyike and Pascual, {M. Belen} and Leonard Petrucelli and Peter Pressman and Rosa Rademakers and Vijay Ramanan and Ramos, {E. Marisa} and Meghana Rao and Katya Rascovsky and Rankin, {Katherine P.} and Aaron Ritter and Roberson, {Erik D.} and Julio Rojas-Martinez and Rosen, {Howard J.} and Rodolfo Savica and William Seeley and Jeremy Syrjanen and Staffaroni, {Adam M.} and Tartaglia, {M. Carmela} and Jack Taylor and Lawren VandeVrede and Sandra Weintraub and Bonnie Wong and Zbigniew Wszolek and Michael Milham and Mutsaerts, {Henk J.M.M.} and Oathes, {Desmond J.} and Olm, {Christopher A.} and Phillips, {Jeffrey S.} and Will Tackett and Roalf, {David R.} and Howard Rosen and Tapera, {Tinashe M.} and Tisdall, {M. Dylan} and Dale Zhou and Oscar Esteban and Poldrack, {Russell A.} and Detre, {John A.} and Satterthwaite, {Theodore D.}",

note = "Funding Information: We acknowledge the support of the following grants: nos. RF1MH121867 (O.E., R.A.P., T.D.S., M.M.), R01MH120482 (T.D.S. and M.M.), R01EB022573 (C.D. and T.D.S.), F31MH126569 (D.Z.), R01MH123550 (T.D.S.), T32MH019112 (E.B.B. and R.E.G.), R01MH120811 (D.J.O.), R01MH112847 (T.D.S.), R01MH112070 (C.D.), RF1AG054409 (C.D.), U01AG052943 (C.M.), U19AG063911 (B.B. and H.R.), AG062422 (H.R.), AG045333 (H.R.), AG019724 (H.R.), P01AG066597 (C.M.), P41EB015893 (J.A.D.), R01MH111886 (D.J.O.), R01MH119219 (R.E.G. and R.C.G.), R01AG054519 (J.S.P.), K01AG061277 (J.S.P.), R01MH120174 (D.R.R.), R01MH119185 (D.R.R.), R03AG063213 (S.D.), R01NS111115 and P30AG072979 (J.A.D.), and the Swiss National Science Foundation - Ambizione 185872 (O.E.). Support was provided by the Dutch Heart Foundation (2020T049; H.J.M.M.M.), by the Eurostars-2 joint program (H.J.M.M.M.) with cofunding from the European Union Horizon 2020 research and innovation program (ASPIRE E!113701) provided by the Netherlands Enterprise Agency (RvO), the EU Joint Program for Neurodegenerative Disease Research provided by the Netherlands Organization for health Research and Development and Alzheimer Nederland (DEBBIE JPND2020-568-106; H.J.M.M.M.), and the AE foundation (T.D.S.). Additional support was provided by the Center for Biomedical Image Computing and Analytics (CBICA; A.A., M.C., T.D.S. and C.D.) the Penn-CHOP Lifespan Brain Institute (LiBI; T.D.S., R.C.G. and R.E.G.). Funding Information: We acknowledge the support of the following grants: nos. RF1MH121867 (O.E., R.A.P., T.D.S., M.M.), R01MH120482 (T.D.S. and M.M.), R01EB022573 (C.D. and T.D.S.), F31MH126569 (D.Z.), R01MH123550 (T.D.S.), T32MH019112 (E.B.B. and R.E.G.), R01MH120811 (D.J.O.), R01MH112847 (T.D.S.), R01MH112070 (C.D.), RF1AG054409 (C.D.), U01AG052943 (C.M.), U19AG063911 (B.B. and H.R.), AG062422 (H.R.), AG045333 (H.R.), AG019724 (H.R.), P01AG066597 (C.M.), P41EB015893 (J.A.D.), R01MH111886 (D.J.O.), R01MH119219 (R.E.G. and R.C.G.), R01AG054519 (J.S.P.), K01AG061277 (J.S.P.), R01MH120174 (D.R.R.), R01MH119185 (D.R.R.), R03AG063213 (S.D.), R01NS111115 and P30AG072979 (J.A.D.), and the Swiss National Science Foundation - Ambizione 185872 (O.E.). Support was provided by the Dutch Heart Foundation (2020T049; H.J.M.M.M.), by the Eurostars-2 joint program (H.J.M.M.M.) with cofunding from the European Union Horizon 2020 research and innovation program (ASPIRE E!113701) provided by the Netherlands Enterprise Agency (RvO), the EU Joint Program for Neurodegenerative Disease Research provided by the Netherlands Organization for health Research and Development and Alzheimer Nederland (DEBBIE JPND2020-568-106; H.J.M.M.M.), and the AE foundation (T.D.S.). Additional support was provided by the Center for Biomedical Image Computing and Analytics (CBICA; A.A., M.C., T.D.S. and C.D.) the Penn-CHOP Lifespan Brain Institute (LiBI; T.D.S., R.C.G. and R.E.G.). Publisher Copyright: {\textcopyright} 2022, The Author(s), under exclusive licence to Springer Nature America, Inc.",

year = "2022",

month = jun,

doi = "10.1038/s41592-022-01458-7",

language = "English",

volume = "19",

pages = "683--686",

journal = "Nature Methods",

issn = "1548-7091",

number = "6",

}

TY - JOUR

T1 - ASLPrep

T2 - a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion

AU - the ALLFTD consortium

AU - Adebimpe, Azeez

AU - Bertolero, Maxwell

AU - Dolui, Sudipto

AU - Cieslak, Matthew

AU - Murtha, Kristin

AU - Baller, Erica B.

AU - Boeve, Bradley

AU - Boxer, Adam

AU - Butler, Ellyn R.

AU - Cook, Phil

AU - Colcombe, Stan

AU - Covitz, Sydney

AU - Davatzikos, Christos

AU - Davila, Diego G.

AU - Elliott, Mark A.

AU - Flounders, Matthew W.

AU - Franco, Alexandre R.

AU - Gur, Raquel E.

AU - Gur, Ruben C.

AU - Jaber, Basma

AU - McMillian, Corey

AU - Apostolova, Liana

AU - Appleby, Brian

AU - Barmada, Sami

AU - Bordelon, Yvette

AU - Botha, Hugo

AU - Boxer, Adam L.

AU - Bozoki, Andrea

AU - Brushaber, Danielle

AU - Clark, David

AU - Coppola, Giovanni

AU - Darby, Ryan

AU - Dickson, Dennis

AU - Domoto-Reilly, Kimiko

AU - Faber, Kelley

AU - Fagan, Anne

AU - Fields, Julie A.

AU - Foroud, Tatiana

AU - Forsberg, Leah K.

AU - Geschwind, Daniel

AU - Goldman, Jill

AU - Galasko, Douglas R.

AU - Gavrilova, Ralitza

AU - Gendron, Tania

AU - Graff-Radford, Jonathon

AU - Graff-Radford, Neill

AU - Grant, Ian M.

AU - Grossman, Murray

AU - Hall, Matthew

AU - Huang, Eric

AU - Heuer, Hilary W.

AU - Hsiung, Ging Yuek Robin

AU - Huey, Edward D.

AU - Irwin, David

AU - Jones, David T.

AU - Kantarci, Kejal

AU - Kaufer, Daniel

AU - Kerwin, Diana

AU - Knopman, David

AU - Kornak, John

AU - Kramer, Joel

AU - Kremers, Walter

AU - Lapid, Maria

AU - Lago, Argentina Lario

AU - Leger, Gabriel

AU - Ljubenkov, Peter

AU - Litvan, Irene

AU - Lucente, Diane

AU - Mackenzie, Ian R.

AU - Masdeu, Joseph C.

AU - McGinnis, Scott

AU - Mendez, Mario

AU - Mester, Carly

AU - Miller, Bruce L.

AU - Onyike, Chiadi

AU - Pascual, M. Belen

AU - Petrucelli, Leonard

AU - Pressman, Peter

AU - Rademakers, Rosa

AU - Ramanan, Vijay

AU - Ramos, E. Marisa

AU - Rao, Meghana

AU - Rascovsky, Katya

AU - Rankin, Katherine P.

AU - Ritter, Aaron

AU - Roberson, Erik D.

AU - Rojas-Martinez, Julio

AU - Rosen, Howard J.

AU - Savica, Rodolfo

AU - Seeley, William

AU - Syrjanen, Jeremy

AU - Staffaroni, Adam M.

AU - Tartaglia, M. Carmela

AU - Taylor, Jack

AU - VandeVrede, Lawren

AU - Weintraub, Sandra

AU - Wong, Bonnie

AU - Wszolek, Zbigniew

AU - Milham, Michael

AU - Mutsaerts, Henk J.M.M.

AU - Oathes, Desmond J.

AU - Olm, Christopher A.

AU - Phillips, Jeffrey S.

AU - Tackett, Will

AU - Roalf, David R.

AU - Rosen, Howard

AU - Tapera, Tinashe M.

AU - Tisdall, M. Dylan

AU - Zhou, Dale

AU - Esteban, Oscar

AU - Poldrack, Russell A.

AU - Detre, John A.

AU - Satterthwaite, Theodore D.

N1 - Funding Information: We acknowledge the support of the following grants: nos. RF1MH121867 (O.E., R.A.P., T.D.S., M.M.), R01MH120482 (T.D.S. and M.M.), R01EB022573 (C.D. and T.D.S.), F31MH126569 (D.Z.), R01MH123550 (T.D.S.), T32MH019112 (E.B.B. and R.E.G.), R01MH120811 (D.J.O.), R01MH112847 (T.D.S.), R01MH112070 (C.D.), RF1AG054409 (C.D.), U01AG052943 (C.M.), U19AG063911 (B.B. and H.R.), AG062422 (H.R.), AG045333 (H.R.), AG019724 (H.R.), P01AG066597 (C.M.), P41EB015893 (J.A.D.), R01MH111886 (D.J.O.), R01MH119219 (R.E.G. and R.C.G.), R01AG054519 (J.S.P.), K01AG061277 (J.S.P.), R01MH120174 (D.R.R.), R01MH119185 (D.R.R.), R03AG063213 (S.D.), R01NS111115 and P30AG072979 (J.A.D.), and the Swiss National Science Foundation - Ambizione 185872 (O.E.). Support was provided by the Dutch Heart Foundation (2020T049; H.J.M.M.M.), by the Eurostars-2 joint program (H.J.M.M.M.) with cofunding from the European Union Horizon 2020 research and innovation program (ASPIRE E!113701) provided by the Netherlands Enterprise Agency (RvO), the EU Joint Program for Neurodegenerative Disease Research provided by the Netherlands Organization for health Research and Development and Alzheimer Nederland (DEBBIE JPND2020-568-106; H.J.M.M.M.), and the AE foundation (T.D.S.). Additional support was provided by the Center for Biomedical Image Computing and Analytics (CBICA; A.A., M.C., T.D.S. and C.D.) the Penn-CHOP Lifespan Brain Institute (LiBI; T.D.S., R.C.G. and R.E.G.). Funding Information: We acknowledge the support of the following grants: nos. RF1MH121867 (O.E., R.A.P., T.D.S., M.M.), R01MH120482 (T.D.S. and M.M.), R01EB022573 (C.D. and T.D.S.), F31MH126569 (D.Z.), R01MH123550 (T.D.S.), T32MH019112 (E.B.B. and R.E.G.), R01MH120811 (D.J.O.), R01MH112847 (T.D.S.), R01MH112070 (C.D.), RF1AG054409 (C.D.), U01AG052943 (C.M.), U19AG063911 (B.B. and H.R.), AG062422 (H.R.), AG045333 (H.R.), AG019724 (H.R.), P01AG066597 (C.M.), P41EB015893 (J.A.D.), R01MH111886 (D.J.O.), R01MH119219 (R.E.G. and R.C.G.), R01AG054519 (J.S.P.), K01AG061277 (J.S.P.), R01MH120174 (D.R.R.), R01MH119185 (D.R.R.), R03AG063213 (S.D.), R01NS111115 and P30AG072979 (J.A.D.), and the Swiss National Science Foundation - Ambizione 185872 (O.E.). Support was provided by the Dutch Heart Foundation (2020T049; H.J.M.M.M.), by the Eurostars-2 joint program (H.J.M.M.M.) with cofunding from the European Union Horizon 2020 research and innovation program (ASPIRE E!113701) provided by the Netherlands Enterprise Agency (RvO), the EU Joint Program for Neurodegenerative Disease Research provided by the Netherlands Organization for health Research and Development and Alzheimer Nederland (DEBBIE JPND2020-568-106; H.J.M.M.M.), and the AE foundation (T.D.S.). Additional support was provided by the Center for Biomedical Image Computing and Analytics (CBICA; A.A., M.C., T.D.S. and C.D.) the Penn-CHOP Lifespan Brain Institute (LiBI; T.D.S., R.C.G. and R.E.G.). Publisher Copyright: © 2022, The Author(s), under exclusive licence to Springer Nature America, Inc.

PY - 2022/6

Y1 - 2022/6

N2 - Arterial spin labeled (ASL) magnetic resonance imaging (MRI) is the primary method for noninvasively measuring regional brain perfusion in humans. We introduce ASLPrep, a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data.

AB - Arterial spin labeled (ASL) magnetic resonance imaging (MRI) is the primary method for noninvasively measuring regional brain perfusion in humans. We introduce ASLPrep, a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data.

UR - http://www.scopus.com/inward/record.url?scp=85131902855&partnerID=8YFLogxK

U2 - 10.1038/s41592-022-01458-7

DO - 10.1038/s41592-022-01458-7

M3 - Article

C2 - 35689029

AN - SCOPUS:85131902855

SN - 1548-7091

VL - 19

SP - 683

EP - 686

JO - Nature Methods

JF - Nature Methods

IS - 6

ER -

ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion

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