Accelerator design for protein sequence HMM search

Keyphrases

• Protein Sequence 100%
• Hidden Markov Model 100%
• Search Model 100%
• Pipeline Stages 100%
• Accelerator Design 100%
• Parallelization 66%
• Order of Magnitude 33%
• Rate of Increase 33%
• Large Collection 33%
• Genome Sequencing 33%
• Performance Model 33%
• Region of Interest 33%
• Nave 33%
• Performance Improvement 33%
• Protein Database 33%
• Computational Burden 33%
• Single Processor 33%
• Software Solution 33%
• Profile Hidden Markov Models (pHMMs) 33%
• Explode 33%
• Instantiation 33%
• Functional Motif 33%
• Coarse-grained Parallelism 33%
• Systolic Array 33%
• Search System 33%
• Model Database 33%
• Parallel Copy 33%
• Analytic Performance 33%
• Fine-grained Parallelism 33%

Computer Science

• Pipeline Stage 100%
• Amino Acid Sequence 100%
• Performance Improvement 33%
• Parallelism 33%
• Performance Model 33%
• Protein Database 33%
• Software Solution 33%
• Instantiation 33%
• Coarse-Grained Parallelism 33%
• Compute Resource 33%
• Parallelization 33%
• Single Processor 33%
• Functional Unit 33%
• Entire Database 33%
• Grained Parallelism 33%
• Systolic Arrays 33%