TY - JOUR
T1 - A new approach to the detection and statistical classification of Ca 2+ sparks
AU - Bányász, Tamás
AU - Chen-Izu, Ye
AU - Balke, C. W.
AU - Izu, Leighton T.
N1 - Funding Information:
We have developed a new approach to the detection of Ca 2+ sparks in 2-D confocal images, in which the statistical sieving candidate sparks are an integral part of the detection process. Having demonstrated that the new detection algorithms are successful in detecting Ca 2+ sparks, the principle of statistical sieving should be applicable to all forms of event detection. This work was supported in part by National Institutes of Health grants K25HL068704 (L.T.I.), RO1HL071865 (C.W.B. and L.T.I.), and RO1HL68733 (C.W.B.), and American Heart Association Scientist Development Grant 0335250N (Y.C.).
PY - 2007/6
Y1 - 2007/6
N2 - The availability of high-speed, two-dimensional (2-D) confocal microscopes and the expanding armamentarium of fluorescent probes presents unprecedented opportunities and new challenges for studying the spatial and temporal dynamics of cellular processes. The need to remove subjectivity from the detection process, the difficulty of the human eye to detect subtle changes in fluorescence in these 2-D images, and the large volume of data produced by these confocal microscopes call for the need to develop algorithms to automatically mark the changes in fluorescence. These fluorescence signal changes are often subtle, so the statistical estimate of the likelihood that the detected signal is not noise is an integral part of the detection algorithm. This statistical estimation is fundamental to our new approach to detection; in earlier Ca 2+ spark detectors, this statistical assessment was incidental to detection. Importantly, the use of the statistical properties of the signal local to the spark, instead of over the whole image, reduces the false positive and false negative rates. We developed an automatic spark detection algorithm based on these principles and used it to detect sparks on an inhomogeneous background of transverse tubule-labeled rat ventricular cells. Because of the large region of the cell surveyed by the confocal microscope, we can detect a large enough number of sparks to measure the dynamic changes in spark frequency in individual cells. We also found, in contrast to earlier results, that cardiac sparks are spatially symmetric. This new approach puts the detection of fluorescent signals on a firm statistical foundation.
AB - The availability of high-speed, two-dimensional (2-D) confocal microscopes and the expanding armamentarium of fluorescent probes presents unprecedented opportunities and new challenges for studying the spatial and temporal dynamics of cellular processes. The need to remove subjectivity from the detection process, the difficulty of the human eye to detect subtle changes in fluorescence in these 2-D images, and the large volume of data produced by these confocal microscopes call for the need to develop algorithms to automatically mark the changes in fluorescence. These fluorescence signal changes are often subtle, so the statistical estimate of the likelihood that the detected signal is not noise is an integral part of the detection algorithm. This statistical estimation is fundamental to our new approach to detection; in earlier Ca 2+ spark detectors, this statistical assessment was incidental to detection. Importantly, the use of the statistical properties of the signal local to the spark, instead of over the whole image, reduces the false positive and false negative rates. We developed an automatic spark detection algorithm based on these principles and used it to detect sparks on an inhomogeneous background of transverse tubule-labeled rat ventricular cells. Because of the large region of the cell surveyed by the confocal microscope, we can detect a large enough number of sparks to measure the dynamic changes in spark frequency in individual cells. We also found, in contrast to earlier results, that cardiac sparks are spatially symmetric. This new approach puts the detection of fluorescent signals on a firm statistical foundation.
UR - http://www.scopus.com/inward/record.url?scp=34250307211&partnerID=8YFLogxK
U2 - 10.1529/biophysj.106.103069
DO - 10.1529/biophysj.106.103069
M3 - Article
C2 - 17400702
AN - SCOPUS:34250307211
SN - 0006-3495
VL - 92
SP - 4458
EP - 4465
JO - Biophysical Journal
JF - Biophysical Journal
IS - 12
ER -