A multi-omics database for parasitic nematodes and trematodes

John Martin, Rahul Tyagi, Bruce A. Rosa, Makedonka Mitreva

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

6 Scopus citations

Abstract

Helminth.net (www.helminth.net) is a web-based resource that was launched in 2000 as simply “ Nematode.net ” to host and investigate gene sequences from nematode genomes. Over the years it has evolved to become the moniker for a collection of databases: Nematode.net and Trematode.net. These databases host information for 73 nematode (roundworms) and 17 trematode (flatworms) species and serve as backbone for a number of tools that allow users to query slices of the data for multifactorial combinations of species-omics properties. Recent focus has been on inclusion of gene and protein expression data, population genomics and cross-kingdom interactions (metagenomics datasets). This chapter describes the website, the available tools and some of the new features.

Original languageEnglish
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages371-397
Number of pages27
DOIs
StatePublished - 2018

Publication series

NameMethods in Molecular Biology
Volume1757
ISSN (Print)1064-3745

Keywords

  • BLAST
  • Database
  • Functional annotation
  • Genome browser
  • Metagenome
  • Nematodes
  • Proteome
  • Search
  • Transcriptome
  • Trematodes

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