Personal profile

Research interests

My research focus is on the discovery and characterization of genetic etiological factors involved in neurodevelopmental disorders (NDDs). Most of my work has applied genetic and functional approaches to understand autism with a focus on de novo and rare inherited variants, the potential underpinnings of the sex bias, birth order effects, and clustering of disease mutations in the primary protein structure. While there has been considerable progress in our understanding of the genetics of NDDs through the use of exome and array technologies there still remains an appreciable gap in understanding of their genetic architecture. Therefore, one major area of recent focus is variation in the noncoding genome. Main areas of work in the lab include assessment of whole-exome sequencing and whole-genome sequencing data in families with neurodevelopmental disorders, variant prioritization using functional genomic data, massively parallel reporter assays, and other functional experiments assessing consequences of variation.

Mentoring

Recently, we defined Precision Genomics as “determining all possible relevant genomic variation within an individual to the precise nucleotide.” My lab focuses on scientific aspects necessary for the future of Precision Genomics. Two of these include interpretation of noncoding variation and variants missed due to genomic technology. 

Available to Mentor:

  • Undergraduate Students
  • Post-Baccalaureate Students
  • PhD/MSTP Students
  • Postdocs
  • Residents and Fellows

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Collaborations and top research areas from the last five years

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  • CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

    The Critical Assessment of Genome Interpretation Consortium, Jain, S., Bakolitsa, C., Brenner, S. E., Radivojac, P., Moult, J., Repo, S., Hoskins, R. A., Andreoletti, G., Barsky, D., Chellapan, A., Chu, H., Dabbiru, N., Kollipara, N. K., Ly, M., Neumann, A. J., Pal, L. R., Odell, E., Pandey, G. & Peters-Petrulewicz, R. C. & 181 others, Srinivasan, R., Yee, S. F., Yeleswarapu, S. J., Zuhl, M., Adebali, O., Patra, A., Beer, M. A., Hosur, R., Peng, J., Bernard, B. M., Berry, M., Dong, S., Boyle, A. P., Adhikari, A., Chen, J., Hu, Z., Wang, R., Wang, Y., Miller, M., Wang, Y., Bromberg, Y., Turina, P., Capriotti, E., Han, J. J., Ozturk, K., Carter, H., Babbi, G., Bovo, S., Di Lena, P., Martelli, P. L., Savojardo, C., Casadio, R., Cline, M. S., De Baets, G., Bonache, S., Díez, O., Gutiérrez-Enríquez, S., Fernández, A., Montalban, G., Ootes, L., Özkan, S., Padilla, N., Riera, C., De la Cruz, X., Diekhans, M., Huwe, P. J., Wei, Q., Xu, Q., Dunbrack, R. L., Gotea, V., Elnitski, L., Margolin, G., Fariselli, P., Kulakovskiy, I. V., Makeev, V. J., Penzar, D. D., Vorontsov, I. E., Favorov, A. V., Forman, J. R., Hasenahuer, M., Fornasari, M. S., Parisi, G., Avsec, Z., Çelik, M. H., Nguyen, T. Y. D., Gagneur, J., Shi, F. Y., Edwards, M. D., Guo, Y., Tian, K., Zeng, H., Gifford, D. K., Göke, J., Zaucha, J., Gough, J., Ritchie, G. R. S., Frankish, A., Mudge, J. M., Harrow, J., Young, E. L., Yu, Y., Huff, C. D., Murakami, K., Nagai, Y., Imanishi, T., Mungall, C. J., Jacobsen, J. O. B., Kim, D., Jeong, C. S., Jones, D. T., Li, M. J., Guthrie, V. B., Bhattacharya, R., Chen, Y. C., Douville, C., Fan, J., Kim, D., Masica, D., Niknafs, N., Sengupta, S., Tokheim, C., Turner, T. N., Yeo, H. T. G., Karchin, R., Shin, S., Welch, R., Keles, S., Li, Y., Kellis, M., Corbi-Verge, C., Strokach, A. V., Kim, P. M., Klein, T. E., Mohan, R., Sinnott-Armstrong, N. A., Wainberg, M., Kundaje, A., Gonzaludo, N., Mak, A. C. Y., Chhibber, A., Lam, H. Y. K., Dahary, D., Fishilevich, S., Lancet, D., Lee, I., Bachman, B., Katsonis, P., Lua, R. C., Wilson, S. J., Lichtarge, O., Bhat, R. R., Sundaram, L., Viswanath, V., Bellazzi, R., Nicora, G., Rizzo, E., Limongelli, I., Mezlini, A. M., Chang, R., Kim, S., Lai, C., O’Connor, R., Topper, S., van den Akker, J., Zhou, A. Y., Zimmer, A. D., Mishne, G., Bergquist, T. R., Breese, M. R., Guerrero, R. F., Jiang, Y., Kiga, N., Li, B., Mort, M., Pagel, K. A., Pejaver, V., Stamboulian, M. H., Thusberg, J., Mooney, S. D., Teerakulkittipong, N., Cao, C., Kundu, K., Yin, Y., Yu, C. H., Kleyman, M., Lin, C. F., Stackpole, M., Mount, S. M., Eraslan, G., Mueller, N. S., Naito, T., Rao, A. R., Azaria, J. R., Brodie, A., Ofran, Y., Garg, A., Pal, D., Hawkins-Hooker, A., Kenlay, H., Reid, J. & Mucaki, E. J., Dec 2024, In: Genome biology. 25, 1, 53.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    12 Scopus citations
  • Examining Sex Differences in Autism Heritability

    Sandin, S., Yip, B. H. K., Yin, W., Weiss, L. A., Dougherty, J. D., Fass, S., Constantino, J. N., Hailin, Z., Turner, T. N., Marrus, N., Gutmann, D. H., Sanders, S. J. & Christoffersson, B., Jul 3 2024, In: JAMA psychiatry. 81, 7, p. 673-680 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    4 Scopus citations
  • HAT: De novo variant calling for highly accurate short-read and long-read sequencing data

    Ng, J. K. & Turner, T. N., Jan 1 2024, In: Bioinformatics. 40, 1, btad775.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • The Impact of Patterns in Linkage Disequilibrium and Sequencing Quality on the Imprint of Balancing Selection

    Hayeck, T. J., Li, Y., Mosbruger, T. L., Bradfield, J. P., Gleason, A. G., Damianos, G., Shaw, G. T. W., Duke, J. L., Conlin, L. K., Turner, T. N., Fernández-Viña, M. A., Sarmady, M. & Monos, D. S., Feb 1 2024, In: Genome Biology and Evolution. 16, 2, evae009.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • Using a new analytic approach for genotyping and phenotyping chromosome 9p deletion syndrome

    Starosta, R. T., Jensen, N., Couteranis, S., Slaugh, R., Easterlin, D., Tate, V., Sams, E. I., Valle, K., Akinwe, T., Hou, Y. C. C., Turner, T. N., Cole, F. S., Milbrandt, J. & Dickson, P., Sep 2024, In: European Journal of Human Genetics. 32, 9, p. 1095-1105 11 p.

    Research output: Contribution to journalArticlepeer-review

    1 Scopus citations