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Todd Wylie

Associate Professor of Pediatrics

 https://orcid.org/0000-0001-8834-8404
    • 42507
      Citations
    19992023

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    • 2023

      Metagenomic Analysis of DNA Viruses with Targeted Sequence Capture of Canine Lobular Orbital Adenomas and Normal Conjunctiva

      Schaefer, E. A. F., Chu, S., Wylie, K. M., Wylie, T. N., Griffith, O. L., Pearce, J. W., Johnson, G. C., Bryan, J. N. & Flesner, B. K., May 2023, In: Microorganisms. 11, 5, 1163.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2 Scopus citations

    • Pathogen and Antibody Identification in Children with Encephalitis in Myanmar

      Galardi, M. M., Sowa, G. M., Crockett, C. D., Rudock, R., Smith, A. E., Shwe, E. E., San, T., Linn, K., Aye, A. M. M., Ramachandran, P. S., Zia, M., Wapniarski, A. E., Hawes, I. A., Hlaing, C. S., Kyu, E. H., Thair, C., Mar, Y. Y., Nway, N., Storch, G. A. & Wylie, K. M. & 4 others, Wylie, T. N., Dalmau, J., Wilson, M. R. & Mar, S. S., Mar 2023, In: Annals of neurology. 93, 3, p. 615-628 14 p.

      Research output: Contribution to journal › Article › peer-review

      10 Scopus citations

    • Targeted Metagenomic Sequencing for Detection of Vertebrate Viruses in Wastewater for Public Health Surveillance

      McCall, C., Leo Elworth, R. A., Wylie, K. M., Wylie, T. N., Dyson, K., Doughty, R., Treangen, T. J., Hopkins, L., Ensor, K. & Stadler, L. B., Sep 8 2023, In: ACS ES and T Water. 3, 9, p. 2955-2965 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      8 Scopus citations

    • Virome Analysis and Association of Positive Coxsackievirus B Serology during Pregnancy with Congenital Heart Disease

      Garand, M., Huang, S. S. Y., Goessling, L. S., Wan, F., Santillan, D. A., Santillan, M. K., Brar, A., Wylie, T. N., Wylie, K. M. & Eghtesady, P., Feb 2023, In: Microorganisms. 11, 2, 262.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations
    • 2022

      A Case of Persistent Human Pegivirus Infection in Two Separate Pregnancies of a Woman

      Garand, M., Huang, S. S. Y., Goessling, L. S., Santillan, D. A., Santillan, M. K., Brar, A., Wylie, T. N., Wylie, K. M. & Eghtesady, P., Oct 2022, In: Microorganisms. 10, 10, 1925.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2 Scopus citations

    • Comparison of Metagenomic Sequencing and the NanoString nCounter Analysis System for the Characterization of Bacterial and Viral Communities in Vaginal Samples

      Wylie, T. N., Schrimpf, J., Gula, H., Herter, B. N. & Wylie, K. M., Sep 2022, In: mSphere. 7, 5

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations

    • Fecal microbiome and bile acid metabolome in adult short bowel syndrome

      Boutte, H. J., Chen, J., Wylie, T. N., Wylie, K. M., Xie, Y., Geisman, M., Prabu, A., Gazit, V., Tarr, P. I., Levin, M. S., Warner, B. W., Davidson, N. O. & Rubin, D. C., Jan 2022, In: American Journal of Physiology - Gastrointestinal and Liver Physiology. 322, 1, p. G154-G168

      Research output: Contribution to journal › Article › peer-review

      Open Access
      15 Scopus citations

    • Longitudinal Dynamics of Skin Bacterial Communities in the Context of Staphylococcus aureus Decolonization

      Fritz, S. A., Wylie, T. N., Gula, H., Hogan, P. G., Boyle, M. G., Muenks, C. E., Sullivan, M. L., Burnham, C. A. D. & Wylie, K. M., Apr 2022, In: Microbiology spectrum. 10, 2

      Research output: Contribution to journal › Article › peer-review

      Open Access
      4 Scopus citations
    • 2021

      Chronic villitis of unknown etiology: Investigations into viral pathogenesis

      Ernst, L. M., Bockoven, C., Freedman, A., Wang, V., Pellerite, M., Wylie, T. N. & Wylie, K. M., Apr 2021, In: Placenta. 107, p. 24-30 7 p.

      Research output: Contribution to journal › Article › peer-review

      14 Scopus citations

    • ViroMatch: A computational pipeline for the detection of viral sequences from complex metagenomic data

      Wylie, T. N. & Wylie, K. M., Mar 4 2021, In: Microbiology Resource Announcements. 10, 9, e01468-20.

      Research output: Contribution to journal › Article › peer-review

      13 Scopus citations
    • 2020

      A virome sequencing approach to feline oral squamous cell carcinoma to evaluate viral causative factors

      Chu, S., Wylie, T. N., Wylie, K. M., Johnson, G. C., Skidmore, Z. L., Fleer, M., Griffith, O. L. & Bryan, J. N., Jan 2020, In: Veterinary Microbiology. 240, 108491.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      25 Scopus citations
    • 2019

      Carriage of the toxic shock syndrome toxin gene by contemporary community-associated staphylococcus aureus isolates

      Parrish, K. L., Wylie, K. M., Reich, P. J., Hogan, P. G., Wylie, T. N., Kennedy, C. R., Lainhart, W., Hunstad, D. A., Burnham, C. A. D. & Fritz, S. A., Mar 20 2019, In: Journal of the Pediatric Infectious Diseases Society. 8, 5, p. 470-473 4 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5 Scopus citations

    • Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese

      Papineau, A., Berhane, Y., Wylie, T. N., Wylie, K. M., Sharpe, S. & Lung, O., Dec 1 2019, In: Scientific reports. 9, 1, 5954.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      31 Scopus citations

    • Host gene expression in nose and blood for the diagnosis of viral respiratory infection

      Yu, J., Peterson, D. R., Baran, A. M., Bhattacharya, S., Wylie, T. N., Falsey, A. R., Mariani, T. J. & Storch, G. A., Mar 15 2019, In: Journal of Infectious Diseases. 219, 7, p. 1151-1161 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      34 Scopus citations

    • Impaired Chylomicron Assembly Modifies Hepatic Metabolism Through Bile Acid–Dependent and Transmissible Microbial Adaptations

      Xie, Y., Matsumoto, H., Kennedy, S., Newberry, E. P., Moritz, W., DeBosch, B. J., Moley, K. H., Rubin, D. C., Warner, B. W., Kau, A. L., Tarr, P. I., Wylie, T. N., Wylie, K. M. & Davidson, N. O., Oct 1 2019, In: Hepatology. 70, 4, p. 1168-1184 17 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      12 Scopus citations

    • Whole-Genome Sequencing of Klebsiella pneumoniae Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection

      Wylie, K. M., Wylie, T. N., Minx, P. J. & Rosen, D. A., Feb 8 2019, In: Frontiers in cellular and infection microbiology. 9, 14.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      10 Scopus citations
    • 2018

      Carriage of Cronobacter sakazakii in the Very Preterm Infant Gut

      Chandrasekaran, S., Burnham, C. A. D., Warner, B. B., Tarr, P. I. & Wylie, T. N., Jul 2 2018, In: Clinical Infectious Diseases. 67, 2, p. 269-274 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      14 Scopus citations

    • Detection of viruses in clinical samples by use of metagenomic sequencing and targeted sequence capture

      Wylie, K. M., Wylie, T. N., Buller, R., Herter, B., Cannella, M. T. & Storch, G. A., Dec 2018, In: Journal of clinical microbiology. 56, 12, e01123-18.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      40 Scopus citations

    • Remnant Small Bowel Length in Pediatric Short Bowel Syndrome and the Correlation with Intestinal Dysbiosis and Linear Growth

      Engelstad, H. J., Barron, L., Moen, J., Wylie, T. N., Wylie, K., Rubin, D. C., Davidson, N., Cade, W. T., Warner, B. B. & Warner, B. W., Oct 2018, In: Journal of the American College of Surgeons. 227, 4, p. 439-449 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      30 Scopus citations

    • The vaginal eukaryotic DNA virome and preterm birth

      Wylie, K. M., Wylie, T. N., Cahill, A. G., Macones, G. A., Tuuli, M. G. & Stout, M. J., Aug 2018, In: American journal of obstetrics and gynecology. 219, 2, p. 189.e1-189.e12

      Research output: Contribution to journal › Article › peer-review

      68 Scopus citations
    • 2017

      Genome sequence of enterovirus D68 from St. Louis, Missouri, USA, 2016

      Wylie, K. M., Wylie, T. N. & Storch, G. A., 2017, In: Genome Announcements. 5, 9, e01630-16.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2 Scopus citations
    • 2016

      High-throughput sequencing of cerebrospinal fluid for diagnosis of chronic Propionibacterium acnes meningitis in an allogeneic stem cell transplant recipient

      Wylie, K. M., Blanco-Guzman, M., Wylie, T. N., Lawrence, S. J., Ghobadi, A., Dipersio, J. F. & Storch, G. A., Apr 1 2016, In: Transplant Infectious Disease. 18, 2, p. 227-233 7 p.

      Research output: Contribution to journal › Article › peer-review

      20 Scopus citations
    • 2015

      Development and evaluation of an enterovirus D68 real-time reverse transcriptase PCR assay

      Wylie, T. N., Wylie, K. M., Buller, R. S., Cannella, M. & Storch, G. A., Aug 1 2015, In: Journal of clinical microbiology. 53, 8, p. 2641-2647 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      42 Scopus citations

    • Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains

      Rodriguez, M., Hogan, P. G., Satola, S. W., Crispell, E., Wylie, T., Gao, H., Sodergren, E., Weinstock, G. M., Burnham, C. A. D. & Fritz, S. A., Sep 1 2015, In: Medicine. 94, 37, p. e1534

      Research output: Contribution to journal › Article › peer-review

      Open Access
      29 Scopus citations

    • Enhanced virome sequencing using targeted sequence capture

      Wylie, T. N., Wylie, K. M., Herter, B. N. & Storch, G. A., Dec 2015, In: Genome research. 25, 12, p. 1910-1920 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      175 Scopus citations

    • Genome Modeling System: A Knowledge Management Platform for Genomics

      Griffith, M., Griffith, O. L., Smith, S. M., Ramu, A., Callaway, M. B., Brummett, A. M., Kiwala, M. J., Coffman, A. C., Regier, A. A., Oberkfell, B. J., Sanderson, G. E., Mooney, T. P., Nutter, N. G., Belter, E. A., Du, F., Long, R. L., Abbott, T. E., Ferguson, I. T., Morton, D. L. & Burnett, M. M. & 44 others, Weible, J. V., Peck, J. B., Dukes, A., McMichael, J. F., Lolofie, J. T., Derickson, B. R., Hundal, J., Skidmore, Z. L., Ainscough, B. J., Dees, N. D., Schierding, W. S., Kandoth, C., Kim, K. H., Lu, C., Harris, C. C., Maher, N., Maher, C. A., Magrini, V. J., Abbott, B. S., Chen, K., Clark, E., Das, I., Fan, X., Hawkins, A. E., Hepler, T. G., Wylie, T. N., Leonard, S. M., Schroeder, W. E., Shi, X., Carmichael, L. K., Weil, M. R., Wohlstadter, R. W., Stiehr, G., McLellan, M. D., Pohl, C. S., Miller, C. A., Koboldt, D. C., Walker, J. R., Eldred, J. M., Larson, D. E., Dooling, D. J., Ding, L., Mardis, E. R. & Wilson, R. K., Jul 1 2015, In: PLoS computational biology. 11, 7, e1004274.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      65 Scopus citations

    • RNA Sequencing of Tumor-Associated Microglia Reveals Ccl5 as a Stromal Chemokine Critical for Neurofibromatosis-1 Glioma Growth

      Solga, A. C., Pong, W. W., Kim, K. Y., Cimino, P. J., Toonen, J. A., Walker, J., Wylie, T., Magrini, V., Griffith, M., Griffith, O. L., Ly, A., Ellisman, M. H., Mardis, E. R. & Gutmann, D. H., 2015, In: Neoplasia (United States). 17, 10, p. 776-788 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      74 Scopus citations

    • RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease

      Solga, A. C., Pong, W. W., Walker, J., Wylie, T., Magrini, V., Apicelli, A. J., Griffith, M., Griffith, O. L., Kohsaka, S., Wu, G. F., Brody, D. L., Mardis, E. R. & Gutmann, D. H., Apr 1 2015, In: Glia. 63, 4, p. 531-548 18 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      30 Scopus citations

    • The transcriptional profile of coronary arteritis in Kawasaki disease

      Rowley, A. H., Wylie, K. M., Kim, K. Y. A., Pink, A. J., Yang, A., Reindel, R., Baker, S. C., Shulman, S. T., Orenstein, J. M., Lingen, M. W., Weinstock, G. M. & Wylie, T. N., Dec 18 2015, In: BMC genomics. 16, 1, 1076.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      61 Scopus citations
    • 2014

      Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin

      The Cancer Genome Atlas Research Network, Aug 14 2014, In: Cell. 158, 4, p. 929-944 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1143 Scopus citations

    • Sepsis from the gut: The enteric habitat of bacteria that cause late-onset neonatal bloodstream infections

      Carl, M. A., Ndao, I. M., Springman, A. C., Manning, S. D., Johnson, J. R., Johnston, B. D., Burnham, C. A. D., Weinstock, E. S., Weinstock, G. M., Wylie, T. N., Mitreva, M., Abubucker, S., Zhou, Y., Stevens, H. J., Hall-Moore, C., Julian, S., Shaikh, N., Warner, B. B. & Tarr, P. I., May 1 2014, In: Clinical Infectious Diseases. 58, 9, p. 1211-1218 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      157 Scopus citations
    • 2013

      F11R Is a Novel Monocyte Prognostic Biomarker for Malignant Glioma

      Pong, W. W., Walker, J., Wylie, T., Magrini, V., Luo, J., Emnett, R. J., Choi, J., Cooper, M. L., Griffith, M., Griffith, O. L., Rubin, J. B., Fuller, G. N., Piwnica-Worms, D., Feng, X., Hambardzumyan, D., DiPersio, J. F., Mardis, E. R. & Gutmann, D. H., Oct 11 2013, In: PloS one. 8, 10, e77571.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      40 Scopus citations

    • Genomic impact of transient low-dose decitabine treatment on primary AMLcells

      Klco, J. M., Spencer, D. H., Lamprecht, T. L., Sarkaria, S. M., Wylie, T., Magrini, V., Hundal, J., Walker, J., Varghese, N., Erdmann-Gilmore, P., Lichti, C. F., Meyer, M. R., Townsend, R. R., Wilson, R. K., Mardis, E. R. & Ley, T. J., Feb 28 2013, In: Blood. 121, 9, p. 1633-1643 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      119 Scopus citations

    • Precise dissection of an escherichia coli o157:H7 outbreak by single nucleotide polymorphism analysis

      Turabelidze, G., Lawrence, S. J., Gao, H., Sodergren, E., Weinstock, G. M., Abubucker, S., Wylie, T., Mitreva, M., Shaikh, N., Gautom, R. & Tarr, P. I., Dec 2013, In: Journal of clinical microbiology. 51, 12, p. 3950-3954 5 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      34 Scopus citations

    • Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma

      Gutmann, D. H., McLellan, M. D., Hussain, I., Wallis, J. W., Fulton, L. L., Fulton, R. S., Magrini, V., Demeter, R., Wylie, T., Kandoth, C., Leonard, J. R., Guha, A., Miller, C. A., Ding, L. & Mardis, E. R., Mar 2013, In: Genome research. 23, 3, p. 431-439 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      101 Scopus citations

    • The cancer genome atlas pan-cancer analysis project

      Weinstein, J. N., Collisson, E. A., Mills, G. B., Shaw, K. R. M., Ozenberger, B. A., Ellrott, K., Sander, C., Stuart, J. M., Chang, K., Creighton, C. J., Davis, C., Donehower, L., Drummond, J., Wheeler, D., Ally, A., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chu, A. & Chuah, E. & 316 others, Chun, H. J. E., Dhalla, N., Guin, R., Hirst, M., Hirst, C., Holt, R. A., Jones, S. J. M., Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Robertson, A. G., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Varhol, R. J., Beroukhim, R., Bhatt, A. S., Brooks, A. N., Cherniack, A. D., Freeman, S. S., Gabriel, S. B., Helman, E., Jung, J., Meyerson, M., Ojesina, A. I., Pedamallu, C. S., Saksena, G., Schumacher, S. E., Tabak, B., Zack, T., Lander, E. S., Bristow, C. A., Hadjipanayis, A., Haseley, P., Kucherlapati, R., Lee, S., Lee, E., Luquette, L. J., Mahadeshwar, H. S., Pantazi, A., Parfenov, M., Park, P. J., Protopopov, A., Ren, X., Santoso, N., Seidman, J., Seth, S., Song, X., Tang, J., Xi, R., Xu, A. W., Yang, L., Zeng, D., Auman, J. T., Balu, S., Buda, E., Fan, C., Hoadley, K. A., Jones, C. D., Meng, S., Mieczkowski, P. A., Parker, J. S., Perou, C. M., Roach, J., Shi, Y., Silva, G. O., Tan, D., Veluvolu, U., Waring, S., Wilkerson, M. D., Wu, J., Zhao, W., Bodenheimer, T., Hayes, D. N., Hoyle, A. P., Jeffreys, S. R., Mose, L. E., Simons, J. V., Soloway, M. G., Baylin, S. B., Berman, B. P., Bootwalla, M. S., Danilova, L., Herman, J. G., Hinoue, T., Laird, P. W., Rhie, S. K., Shen, H., Triche, T., Weisenberger, D. J., Carter, S. L., Cibulskis, K., Chin, L., Zhang, J., Sougnez, C., Wang, M., Getz, G., Dinh, H., Doddapaneni, H. V., Gibbs, R., Gunaratne, P., Han, Y., Kalra, D., Kovar, C., Lewis, L., Morgan, M., Morton, D., Muzny, D., Reid, J., Xi, L., Cho, J., Dicara, D., Frazer, S., Gehlenborg, N., Heiman, D. I., Kim, J., Lawrence, M. S., Lin, P., Liu, Y., Noble, M. S., Stojanov, P., Voet, D., Zhang, H., Zou, L., Stewart, C., Bernard, B., Bressler, R., Eakin, A., Iype, L., Knijnenburg, T., Kramer, R., Kreisberg, R., Leinonen, K., Lin, J., Liu, Y., Miller, M., Reynolds, S. M., Rovira, H., Shmulevich, I., Thorsson, V., Yang, D., Zhang, W., Amin, S., Wu, C. J., Wu, C. C., Akbani, R., Aldape, K., Baggerly, K. A., Broom, B., Casasent, T. D., Cleland, J., Dodda, D., Edgerton, M., Han, L., Herbrich, S. M., Ju, Z., Kim, H., Lerner, S., Li, J., Liang, H., Liu, W., Lorenzi, P. L., Lu, Y., Melott, J., Nguyen, L., Su, X., Verhaak, R., Wang, W., Wong, A., Yang, Y., Yao, J., Yao, R., Yoshihara, K., Yuan, Y., Yung, A. K., Zhang, N., Zheng, S., Ryan, M., Kane, D. W., Aksoy, B. A., Ciriello, G., Dresdner, G., Gao, J., Gross, B., Jacobsen, A., Kahles, A., Ladanyi, M., Lee, W., Lehmann, K. V., Miller, M. L., Ramirez, R., Rätsch, G., Reva, B., Schultz, N., Senbabaoglu, Y., Shen, R., Sinha, R., Sumer, S. O., Sun, Y., Taylor, B. S., Weinhold, N., Fei, S., Spellman, P., Benz, C., Carlin, D., Cline, M., Craft, B., Goldman, M., Haussler, D., Ma, S., Ng, S., Paull, E., Radenbaugh, A., Salama, S., Sokolov, A., Swatloski, T., Uzunangelov, V., Waltman, P., Yau, C., Zhu, J., Hamilton, S. R., Abbott, S., Abbott, R., Dees, N. D., Delehaunty, K., Ding, L., Dooling, D. J., Eldred, J. M., Fronick, C. C., Fulton, R., Fulton, L. L., Kalicki-Veizer, J., Kanchi, K. L., Kandoth, C., Koboldt, D. C., Larson, D. E., Ley, T. J., Lin, L., Lu, C., Magrini, V. J., Mardis, E. R., McLellan, M. D., McMichael, J. F., Miller, C. A., O'Laughlin, M., Pohl, C., Schmidt, H., Smith, S. M., Walker, J., Wallis, J. W., Wendl, M. C., Wilson, R. K., Wylie, T., Zhang, Q., Burton, R., Jensen, M. A., Kahn, A., Pihl, T., Pot, D., Wan, Y., Levine, D. A., Black, A. D., Bowen, J., Frick, J., Gastier-Foster, J. M., Harper, H. A., Helsel, C., Leraas, K. M., Lichtenberg, T. M., McAllister, C., Ramirez, N. C., Sharpe, S., Wise, L., Zmuda, E., Chanock, S. J., Davidsen, T., Demchok, J. A., Eley, G., Felau, I., Sheth, M., Sofia, H., Staudt, L., Tarnuzzer, R., Wang, Z., Yang, L., Zhang, J., Omberg, L., Margolin, A., Raphael, B. J., Vandin, F., Wu, H. T., Leiserson, M. D. M., Benz, S. C., Vaske, C. J., Noushmehr, H., Wolf, D., Veer, L. V. T., Anastassiou, D., Yang, T. H. O., Lopez-Bigas, N., Gonzalez-Perez, A., Tamborero, D., Xia, Z., Li, W., Cho, D. Y., Przytycka, T., Hamilton, M., McGuire, S., Nelander, S., Johansson, P., Jörnsten, R. & Kling, T., Oct 1 2013, In: Nature Genetics. 45, 10, p. 1113-1120 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5585 Scopus citations
    • 2012

      A framework for human microbiome research

      Methé, B. A., Nelson, K. E., Pop, M., Creasy, H. H., Giglio, M. G., Huttenhower, C., Gevers, D., Petrosino, J. F., Abubucker, S., Badger, J. H., Chinwalla, A. T., Earl, A. M., Fitzgerald, M. G., Fulton, R. S., Hallsworth-Pepin, K., Lobos, E. A., Madupu, R., Magrini, V., Martin, J. C. & Mitreva, M. & 228 others, Muzny, D. M., Sodergren, E. J., Versalovic, J., Wollam, A. M., Worley, K. C., Wortman, J. R., Young, S. K., Zeng, Q., Aagaard, K. M., Abolude, O. O., Allen-Vercoe, E., Alm, E. J., Alvarado, L., Andersen, G. L., Anderson, S., Appelbaum, E., Arachchi, H. M., Armitage, G., Arze, C. A., Ayvaz, T., Baker, C. C., Begg, L., Belachew, T., Bhonagiri, V., Bihan, M., Blaser, M. J., Bloom, T., Bonazzi, V. R., Brooks, P., Buck, G. A., Buhay, C. J., Busam, D. A., Campbell, J. L., Canon, S. R., Cantarel, B. L., Chain, P. S., Chen, I. M. A., Chen, L., Chhibba, S., Chu, K., Ciulla, D. M., Clemente, J. C., Clifton, S. W., Conlan, S., Crabtree, J., Cutting, M. A., Davidovics, N. J., Davis, C. C., Desantis, T. Z., Deal, C., Delehaunty, K. D., Dewhirst, F. E., Deych, E., Ding, Y., Dooling, D. J., Dugan, S. P., Michael Dunne, W., Scott Durkin, A., Edgar, R. C., Erlich, R. L., Farmer, C. N., Farrell, R. M., Faust, K., Feldgarden, M., Felix, V. M., Fisher, S., Fodor, A. A., Forney, L., Foster, L., Di Francesco, V., Friedman, J., Friedrich, D. C., Fronick, C. C., Fulton, L. L., Gao, H., Garcia, N., Giannoukos, G., Giblin, C., Giovanni, M. Y., Goldberg, J. M., Goll, J., Gonzalez, A., Griggs, A., Gujja, S., Haas, B. J., Hamilton, H. A., Harris, E. L., Hepburn, T. A., Herter, B., Hoffmann, D. E., Holder, M. E., Howarth, C., Huang, K. H., Huse, S. M., Izard, J., Jansson, J. K., Jiang, H., Jordan, C., Joshi, V., Katancik, J. A., Keitel, W. A., Kelley, S. T., Kells, C., Kinder-Haake, S., King, N. B., Knight, R., Knights, D., Kong, H. H., Koren, O., Koren, S., Kota, K. C., Kovar, C. L., Kyrpides, N. C., La Rosa, P. S., Lee, S. L., Lemon, K. P., Lennon, N., Lewis, C. M., Lewis, L., Ley, R. E., Li, K., Liolios, K., Liu, B., Liu, Y., Lo, C. C., Lozupone, C. A., Dwayne Lunsford, R., Madden, T., Mahurkar, A. A., Mannon, P. J., Mardis, E. R., Markowitz, V. M., Mavrommatis, K., McCorrison, J. M., McDonald, D., McEwen, J., McGuire, A. L., McInnes, P., Mehta, T., Mihindukulasuriya, K. A., Miller, J. R., Minx, P. J., Newsham, I., Nusbaum, C., O'Laughlin, M., Orvis, J., Pagani, I., Palaniappan, K., Patel, S. M., Pearson, M., Peterson, J., Podar, M., Pohl, C., Pollard, K. S., Priest, M. E., Proctor, L. M., Qin, X., Raes, J., Ravel, J., Reid, J. G., Rho, M., Rhodes, R., Riehle, K. P., Rivera, M. C., Rodriguez-Mueller, B., Rogers, Y. H., Ross, M. C., Russ, C., Sanka, R. K., Sankar, P., Fah Sathirapongsasuti, J., Schloss, J. A., Schloss, P. D., Schmidt, T. M., Scholz, M., Schriml, L., Schubert, A. M., Segata, N., Segre, J. A., Shannon, W. D., Sharp, R. R., Sharpton, T. J., Shenoy, N., Sheth, N. U., Simone, G. A., Singh, I., Smillie, C. S., Sobel, J. D., Sommer, D. D., Spicer, P., Sutton, G. G., Sykes, S. M., Tabbaa, D. G., Thiagarajan, M., Tomlinson, C. M., Torralba, M., Treangen, T. J., Truty, R. M., Vishnivetskaya, T. A., Walker, J., Wang, L., Wang, Z., Ward, D. V., Warren, W., Watson, M. A., Wellington, C., Wetterstrand, K. A., White, J. R., Wilczek-Boney, K., Qing Wu, Y., Wylie, K. M., Wylie, T., Yandava, C., Ye, L., Ye, Y., Yooseph, S., Youmans, B. P., Zhang, L., Zhou, Y., Zhu, Y., Zoloth, L., Zucker, J. D., Birren, B. W., Gibbs, R. A., Highlander, S. K., Weinstock, G. M., Wilson, R. K. & White, O., Jun 14 2012, In: Nature. 486, 7402, p. 215-221 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      2016 Scopus citations

    • Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting

      Matsushita, H., Vesely, M. D., Koboldt, D. C., Rickert, C. G., Uppaluri, R., Magrini, V. J., Arthur, C. D., White, J. M., Chen, Y. S., Shea, L. K., Hundal, J., Wendl, M. C., Demeter, R., Wylie, T., Allison, J. P., Smyth, M. J., Old, L. J., Mardis, E. R. & Schreiber, R. D., Feb 16 2012, In: Nature. 482, 7385, p. 400-404 5 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1025 Scopus citations

    • Comprehensive molecular characterization of human colon and rectal cancer

      Muzny, D. M., Bainbridge, M. N., Chang, K., Dinh, H. H., Drummond, J. A., Fowler, G., Kovar, C. L., Lewis, L. R., Morgan, M. B., Newsham, I. F., Reid, J. G., Santibanez, J., Shinbrot, E., Trevino, L. R., Wu, Y. Q., Wang, M., Gunaratne, P., Donehower, L. A., Creighton, C. J. & Wheeler, D. A. & 293 others, Gibbs, R. A., Lawrence, M. S., Voet, D., Jing, R., Cibulskis, K., Sivachenko, A., Stojanov, P., McKenna, A., Lander, E. S., Gabriel, S., Ding, L., Fulton, R. S., Koboldt, D. C., Wylie, T., Walker, J., Dooling, D. J., Fulton, L., Delehaunty, K. D., Fronick, C. C., Demeter, R., Mardis, E. R., Wilson, R. K., Chu, A., Chun, H. J. E., Mungall, A. J., Pleasance, E., Gordon Robertson, A., Stoll, D., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chuah, E., Coope, R. J. N., Dhalla, N., Guin, R., Hirst, C., Hirst, M., Holt, R. A., Lee, D., Li, H. I., Mayo, M., Moore, R. A., Schein, J. E., Slobodan, J. R., Tam, A., Thiessen, N., Varhol, R., Zeng, T., Zhao, Y., Jones, S. J. M., Marra, M. A., Bass, A. J., Ramos, A. H., Saksena, G., Cherniack, A. D., Schumacher, S. E., Tabak, B., Carter, S. L., Pho, N. H., Nguyen, H., Onofrio, R. C., Crenshaw, A., Ardlie, K., Beroukhim, R., Winckler, W., Meyerson, M., Protopopov, A., Hadjipanayis, A., Lee, E., Xi, R., Yang, L., Ren, X., Sathiamoorthy, N., Chen, P. C., Haseley, P., Xiao, Y., Lee, S., Seidman, J., Chin, L., Park, P. J., Kucherlapati, R., Todd Auman, J., Hoadley, K. A., Du, Y., Wilkerson, M. D., Shi, Y., Liquori, C., Meng, S., Li, L., Turman, Y. J., Topal, M. D., Tan, D., Waring, S., Buda, E., Walsh, J., Jones, C. D., Mieczkowski, P. A., Singh, D., Wu, J., Gulabani, A., Dolina, P., Bodenheimer, T., Hoyle, A. P., Simons, J. V., Soloway, M., Mose, L. E., Jefferys, S. R., Balu, S., O'Connor, B. D., Prins, J. F., Chiang, D. Y., Neil Hayes, D., Perou, C. M., Hinoue, T., Weisenberger, D. J., Maglinte, D. T., Pan, F., Berman, B. P., Van Den Berg, D. J., Shen, H., Triche, T., Baylin, S. B., Laird, P. W., Getz, G., Noble, M., Voat, D., Gehlenborg, N., Dicara, D., Zhang, J., Zhang, H., Wu, C. J., Liu, S. Y., Shukla, S., Zhou, L., Lin, P., Park, R. W., Nazaire, M. D., Robinson, J., Thorvaldsdottir, H., Mesirov, J., Thorsson, V., Reynolds, S. M., Bernard, B., Kreisberg, R., Lin, J., Iype, L., Bressler, R., Erkkilä, T., Gundapuneni, M., Liu, Y., Norberg, A., Robinson, T., Yang, D., Zhang, W., Shmulevich, I., De Ronde, J. J., Schultz, N., Cerami, E., Ciriello, G., Goldberg, A. P., Gross, B., Jacobsen, A., Gao, J., Kaczkowski, B., Sinha, R., Arman Aksoy, B., Antipin, Y., Reva, B., Shen, R., Taylor, B. S., Ladanyi, M., Sander, C., Akbani, R., Zhang, N., Broom, B. M., Casasent, T., Unruh, A., Wakefield, C., Hamilton, S. R., Craig Cason, R., Baggerly, K. A., Weinstein, J. N., Haussler, D., Benz, C. C., Stuart, J. M., Benz, S. C., Zachary Sanborn, J., Vaske, C. J., Zhu, J., Szeto, C., Scott, G. K., Yau, C., Ng, S., Goldstein, T., Ellrott, K., Collisson, E., Cozen, A. E., Zerbino, D., Wilks, C., Craft, B., Spellman, P., Penny, R., Shelton, T., Hatfield, M., Morris, S., Yena, P., Shelton, C., Sherman, M., Paulauskis, J., Gastier-Foster, J. M., Bowen, J., Ramirez, N. C., Black, A., Pyatt, R., Wise, L., White, P., Bertagnolli, M., Brown, J., Chan, T. A., Chu, G. C., Czerwinski, C., Denstman, F., Dhir, R., Dörner, A., Fuchs, C. S., Guillem, J. G., Iacocca, M., Juhl, H., Kaufman, A., Iii, B. K., Van Le, X., Mariano, M. C., Medina, E. N., Meyers, M., Nash, G. M., Paty, P. B., Petrelli, N., Rabeno, B., Richards, W. G., Solit, D., Swanson, P., Temple, L., Tepper, J. E., Thorp, R., Vakiani, E., Weiser, M. R., Willis, J. E., Witkin, G., Zeng, Z., Zinner, M. J., Zornig, C., Jensen, M. A., Sfeir, R., Kahn, A. B., Chu, A. L., Kothiyal, P., Wang, Z., Snyder, E. E., Pontius, J., Pihl, T. D., Ayala, B., Backus, M., Walton, J., Whitmore, J., Baboud, J., Berton, D. L., Nicholls, M. C., Srinivasan, D., Raman, R., Girshik, S., Kigonya, P. A., Alonso, S., Sanbhadti, R. N., Barletta, S. P., Greene, J. M., Pot, D. A., Shaw, K. R. M., Dillon, L. A. L., Buetow, K., Davidsen, T., Demchok, J. A., Eley, G., Ferguson, M., Fielding, P., Schaefer, C., Sheth, M., Yang, L., Guyer, M. S., Ozenberger, B. A., Palchik, J. D., Peterson, J., Sofia, H. J. & Thomson., E., Jul 19 2012, In: Nature. 487, 7407, p. 330-337 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      6633 Scopus citations

    • Structure, function and diversity of the healthy human microbiome

      Huttenhower, C., Gevers, D., Knight, R., Abubucker, S., Badger, J. H., Chinwalla, A. T., Creasy, H. H., Earl, A. M., Fitzgerald, M. G., Fulton, R. S., Giglio, M. G., Hallsworth-Pepin, K., Lobos, E. A., Madupu, R., Magrini, V., Martin, J. C., Mitreva, M., Muzny, D. M., Sodergren, E. J. & Versalovic, J. & 228 others, Wollam, A. M., Worley, K. C., Wortman, J. R., Young, S. K., Zeng, Q., Aagaard, K. M., Abolude, O. O., Allen-Vercoe, E., Alm, E. J., Alvarado, L., Andersen, G. L., Anderson, S., Appelbaum, E., Arachchi, H. M., Armitage, G., Arze, C. A., Ayvaz, T., Baker, C. C., Begg, L., Belachew, T., Bhonagiri, V., Bihan, M., Blaser, M. J., Bloom, T., Bonazzi, V., Paul Brooks, J., Buck, G. A., Buhay, C. J., Busam, D. A., Campbell, J. L., Canon, S. R., Cantarel, B. L., Chain, P. S. G., Chen, I. M. A., Chen, L., Chhibba, S., Chu, K., Ciulla, D. M., Clemente, J. C., Clifton, S. W., Conlan, S., Crabtree, J., Cutting, M. A., Davidovics, N. J., Davis, C. C., Desantis, T. Z., Deal, C., Delehaunty, K. D., Dewhirst, F. E., Deych, E., Ding, Y., Dooling, D. J., Dugan, S. P., Michael Dunne, W., Scott Durkin, A., Edgar, R. C., Erlich, R. L., Farmer, C. N., Farrell, R. M., Faust, K., Feldgarden, M., Felix, V. M., Fisher, S., Fodor, A. A., Forney, L. J., Foster, L., Di Francesco, V., Friedman, J., Friedrich, D. C., Fronick, C. C., Fulton, L. L., Gao, H., Garcia, N., Giannoukos, G., Giblin, C., Giovanni, M. Y., Goldberg, J. M., Goll, J., Gonzalez, A., Griggs, A., Gujja, S., Kinder Haake, S., Haas, B. J., Hamilton, H. A., Harris, E. L., Hepburn, T. A., Herter, B., Hoffmann, D. E., Holder, M. E., Howarth, C., Huang, K. H., Huse, S. M., Izard, J., Jansson, J. K., Jiang, H., Jordan, C., Joshi, V., Katancik, J. A., Keitel, W. A., Kelley, S. T., Kells, C., King, N. B., Knights, D., Kong, H. H., Koren, O., Koren, S., Kota, K. C., Kovar, C. L., Kyrpides, N. C., La Rosa, P. S., Lee, S. L., Lemon, K. P., Lennon, N., Lewis, C. M., Lewis, L., Ley, R. E., Li, K., Liolios, K., Liu, B., Liu, Y., Lo, C. C., Lozupone, C. A., Dwayne Lunsford, R., Madden, T., Mahurkar, A. A., Mannon, P. J., Mardis, E. R., Markowitz, V. M., Mavromatis, K., McCorrison, J. M., McDonald, D., McEwen, J., McGuire, A. L., McInnes, P., Mehta, T., Mihindukulasuriya, K. A., Miller, J. R., Minx, P. J., Newsham, I., Nusbaum, C., Oglaughlin, M., Orvis, J., Pagani, I., Palaniappan, K., Patel, S. M., Pearson, M., Peterson, J., Podar, M., Pohl, C., Pollard, K. S., Pop, M., Priest, M. E., Proctor, L. M., Qin, X., Raes, J., Ravel, J., Reid, J. G., Rho, M., Rhodes, R., Riehle, K. P., Rivera, M. C., Rodriguez-Mueller, B., Rogers, Y. H., Ross, M. C., Russ, C., Sanka, R. K., Sankar, P., Fah Sathirapongsasuti, J., Schloss, J. A., Schloss, P. D., Schmidt, T. M., Scholz, M., Schriml, L., Schubert, A. M., Segata, N., Segre, J. A., Shannon, W. D., Sharp, R. R., Sharpton, T. J., Shenoy, N., Sheth, N. U., Simone, G. A., Singh, I., Smillie, C. S., Sobel, J. D., Sommer, D. D., Spicer, P., Sutton, G. G., Sykes, S. M., Tabbaa, D. G., Thiagarajan, M., Tomlinson, C. M., Torralba, M., Treangen, T. J., Truty, R. M., Vishnivetskaya, T. A., Walker, J., Wang, L., Wang, Z., Ward, D. V., Warren, W., Watson, M. A., Wellington, C., Wetterstrand, K. A., White, J. R., Wilczek-Boney, K., Wu, Y., Wylie, K. M., Wylie, T., Yandava, C., Ye, L., Ye, Y., Yooseph, S., Youmans, B. P., Zhang, L., Zhou, Y., Zhu, Y., Zoloth, L., Zucker, J. D., Birren, B. W., Gibbs, R. A., Highlander, S. K., Methé, B. A., Nelson, K. E., Petrosino, J. F., Weinstock, G. M., Wilson, R. K. & White, O., Jun 14 2012, In: Nature. 486, 7402, p. 207-214 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      8518 Scopus citations

    • The origin and evolution of mutations in acute myeloid leukemia

      Welch, J. S., Ley, T. J., Link, D. C., Miller, C. A., Larson, D. E., Koboldt, D. C., Wartman, L. D., Lamprecht, T. L., Liu, F., Xia, J., Kandoth, C., Fulton, R. S., McLellan, M. D., Dooling, D. J., Wallis, J. W., Chen, K., Harris, C. C., Schmidt, H. K., Kalicki-Veizer, J. M. & Lu, C. & 34 others, Zhang, Q., Lin, L., O'Laughlin, M. D., McMichael, J. F., Delehaunty, K. D., Fulton, L. A., Magrini, V. J., McGrath, S. D., Demeter, R. T., Vickery, T. L., Hundal, J., Cook, L. L., Swift, G. W., Reed, J. P., Alldredge, P. A., Wylie, T. N., Walker, J. R., Watson, M. A., Heath, S. E., Shannon, W. D., Varghese, N., Nagarajan, R., Payton, J. E., Baty, J. D., Kulkarni, S., Klco, J. M., Tomasson, M. H., Westervelt, P., Walter, M. J., Graubert, T. A., Dipersio, J. F., Ding, L., Mardis, E. R. & Wilson, R. K., Jul 20 2012, In: Cell. 150, 2, p. 264-278 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1293 Scopus citations
    • 2011

      Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue

      Duncavage, E. J., Magrini, V., Becker, N., Armstrong, J. R., Demeter, R. T., Wylie, T., Abel, H. J. & Pfeifer, J. D., May 2011, In: Journal of Molecular Diagnostics. 13, 3, p. 325-333 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      94 Scopus citations

    • Integrated genomic analyses of ovarian carcinoma

      Bell, D., Berchuck, A., Birrer, M., Chien, J., Cramer, D. W., Dao, F., Dhir, R., Disaia, P., Gabra, H., Glenn, P., Godwin, A. K., Gross, J., Hartmann, L., Huang, M., Huntsman, D. G., Iacocca, M., Imielinski, M., Kalloger, S., Karlan, B. Y. & Levine, D. A. & 240 others, Mills, G. B., Morrison, C., Mutch, D., Olvera, N., Orsulic, S., Park, K., Petrelli, N., Rabeno, B., Rader, J. S., Sikic, B. I., Smith-Mccune, K., Sood, A. K., Bowtell, D., Penny, R., Testa, J. R., Chang, K., Dinh, H. H., Drummond, J. A., Fowler, G., Gunaratne, P., Hawes, A. C., Kovar, C. L., Lewis, L. R., Morgan, M. B., Newsham, I. F., Santibanez, J., Reid, J. G., Trevino, L. R., Wu, Y. Q., Wang, M., Muzny, D. M., Wheeler, D. A., Gibbs, R. A., Getz, G., Lawrence, M. S., Cibulskis, K., Sivachenko, A. Y., Sougnez, C., Voet, D., Wilkinson, J., Bloom, T., Ardlie, K., Fennell, T., Baldwin, J., Gabriel, S., Lander, E. S., Ding, L., Fulton, R. S., Koboldt, D. C., McLellan, M. D., Wylie, T., Walker, J., O'Laughlin, M., Dooling, D. J., Fulton, L., Abbott, R., Dees, N. D., Zhang, Q., Kandoth, C., Wendl, M., Schierding, W., Shen, D., Harris, C. C., Schmidt, H., Kalicki, J., Delehaunty, K. D., Fronick, C. C., Demeter, R., Cook, L., Wallis, J. W., Lin, L., Magrini, V. J., Hodges, J. S., Eldred, J. M., Smith, S. M., Pohl, C. S., Vandin, F., Raphael, B. J., Weinstock, G. M., Mardis, E. R., Wilson, R. K., Meyerson, M., Winckler, W., Verhaak, R. G. W., Carter, S. L., Mermel, C. H., Saksena, G., Nguyen, H., Onofrio, R. C., Hubbard, D., Gupta, S., Crenshaw, A., Ramos, A. H., Chin, L., Protopopov, A., Zhang, J., Kim, T. M., Perna, I., Xiao, Y., Zhang, H., Ren, G., Sathiamoorthy, N., Park, R. W., Lee, E., Park, P. J., Kucherlapati, R., Absher, D. M., Waite, L., Sherlock, G., Brooks, J. D., Li, J. Z., Xu, J., Myers, R. M., Laird, P. W., Cope, L., Herman, J. G., Shen, H., Weisenberger, D. J., Noushmehr, H., Pan, F., Triche, T., Berman, B. P., Van Den Berg, D. J., Buckley, J., Baylin, S. B., Spellman, P. T., Purdom, E., Neuvial, P., Bengtsson, H., Jakkula, L. R., Durinck, S., Han, J., Dorton, S., Marr, H., Choi, Y. G., Wang, V., Wang, N. J., Ngai, J., Conboy, J. G., Parvin, B., Feiler, H. S., Speed, T. P., Gray, J. W., Socci, N. D., Liang, Y., Taylor, B. S., Schultz, N., Borsu, L., Lash, A. E., Brennan, C., Viale, A., Sander, C., Ladanyi, M., Hoadley, K. A., Meng, S., Du, Y., Shi, Y., Li, L., Turman, Y. J., Zang, D., Helms, E. B., Balu, S., Zhou, X., Wu, J., Topal, M. D., Hayes, D. N., Perou, C. M., Wu, C. J., Shukla, S., Sivachenko, A., Jing, R., Liu, Y., Noble, M., Carter, H., Kim, D., Karchin, R., Korkola, J. E., Heiser, L. M., Cho, R. J., Hu, Z., Cerami, E., Olshen, A., Reva, B., Antipin, Y., Shen, R., Mankoo, P., Sheridan, R., Ciriello, G., Chang, W. K., Bernanke, J. A., Haussler, D., Benz, C. C., Stuart, J. M., Benz, S. C., Sanborn, J. Z., Vaske, C. J., Zhu, J., Szeto, C., Scott, G. K., Yau, C., Wilkerson, M. D., Zhang, N., Akbani, R., Baggerly, K. A., Yung, W. K., Weinstein, J. N., Shelton, T., Grimm, D., Hatfield, M., Morris, S., Yena, P., Rhodes, P., Sherman, M., Paulauskis, J., Millis, S., Kahn, A., Greene, J. M., Sfeir, R., Jensen, M. A., Chen, J., Whitmore, J., Alonso, S., Jordan, J., Chu, A., Barker, A., Compton, C., Eley, G., Ferguson, M., Fielding, P., Gerhard, D. S., Myles, R., Schaefer, C., Mills Shaw, K. R., Vaught, J., Vockley, J. B., Good, P. J., Guyer, M. S., Ozenberger, B., Peterson, J. & Thomson, E., Jun 30 2011, In: Nature. 474, 7353, p. 609-615 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      6144 Scopus citations
    • 2010

      Complete characterization of the microRNAome in a patient with acute myeloid leukemia

      Ramsingh, G., Koboldt, D. C., Trissal, M., Chiappinelli, K. B., Wylie, T., Koul, S., Chang, L. W., Nagarajan, R., Fehniger, T. A., Goodfellow, P., Magrini, V., Wilson, R. K., Ding, L., Ley, T. J., Mardis, E. R. & Link, D. C., Dec 9 2010, In: Blood. 116, 24, p. 5316-5326 11 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      59 Scopus citations

    • DNMT3A mutations in acute myeloid leukemia

      Ley, T. J., Ding, L., Walter, M. J., McLellan, M. D., Lamprecht, T., Larson, D. E., Kandoth, C., Payton, J. E., Baty, J., Welch, J., Harris, C. C., Lichti, C. F., Townsend, R. R., Fulton, R. S., Dooling, D. J., Koboldt, D. C., Schmidt, H., Zhang, Q., Osborne, J. R. & Lin, L. & 28 others, O'Laughlin, M., McMichael, J. F., Delehaunty, K. D., McGrath, S. D., Fulton, L. A., Magrini, V. J., Vickery, T. L., Hundal, J., Cook, L. L., Conyers, J. J., Swift, G. W., Reed, J. P., Alldredge, P. A., Wylie, T., Walker, J., Kalicki, J., Watson, M. A., Heath, S., Shannon, W. D., Varghese, N., Nagarajan, R., Westervelt, P., Tomasson, M. H., Link, D. C., Graubert, T. A., DiPersio, J. F., Mardis, E. R. & Wilson, R. K., Dec 16 2010, In: New England Journal of Medicine. 363, 25, p. 2424-2433 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1675 Scopus citations

    • Next-generation sequencing identifies the natural killer cell microRNA transcriptome

      Fehniger, T. A., Wylie, T., Germino, E., Leong, J. W., Magrini, V. J., Koul, S., Keppel, C. R., Schneider, S. E., Koboldt, D. C., Sullivan, R. P., Heinz, M. E., Crosby, S. D., Nagarajan, R., Ramsingh, G., Link, D. C., Ley, T. J. & Mardis, E. R., Nov 2010, In: Genome research. 20, 11, p. 1590-1604 15 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      122 Scopus citations
    • 2009

      Nematode.net update 2008: Improvements enabling more efficient data mining and comparative nematode genomics

      Martin, J., Abubucker, S., Wylie, T., Yin, Y., Wang, Z. & Mitreva, M., 2009, In: Nucleic acids research. 37, SUPPL. 1, p. D571-D578

      Research output: Contribution to journal › Article › peer-review

      Open Access
      31 Scopus citations

    • Recurring mutations found by sequencing an acute myeloid leukemia genome

      Mardis, E. R., Ding, L., Dooling, D. J., Larson, D. E., McLellan, M. D., Chen, K., Koboldt, D. C., Fulton, R. S., Delehaunty, K. D., McGrath, S. D., Fulton, L. A., Locke, D. P., Magrini, V. J., Abbott, R. M., Vickery, T. L., Reed, J. S., Robinson, J. S., Wylie, T., Smith, S. M. & Carmichael, L. & 38 others, Eldred, J. M., Harris, C. C., Walker, J., Peck, J. B., Du, F., Dukes, A. F., Sanderson, G. E., Brummett, A. M., Clark, E., McMichael, J. F., Meyer, R. J., Schindler, J. K., Pohl, C. S., Wallis, J. W., Shi, X., Lin, L., Schmidt, H., Tang, Y., Haipek, C., Wiechert, M. E., Ivy, J. V., Kalicki, J., Elliott, G., Ries, R. E., Payton, J. E., Westervelt, P., Tomasson, M. H., Watson, M. A., Baty, J., Heath, S., Shannon, W. D., Nagarajan, R., Link, D. C., Walter, M. J., Graubert, T. A., DiPersio, J. F., Wilson, R. K. & Ley, T. J., Sep 10 2009, In: New England Journal of Medicine. 361, 11, p. 1058-1066 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1929 Scopus citations

    • VarScan: Variant detection in massively parallel sequencing of individual and pooled samples

      Koboldt, D. C., Chen, K., Wylie, T., Larson, D. E., McLellan, M. D., Mardis, E. R., Weinstock, G. M., Wilson, R. K. & Ding, L., 2009, In: Bioinformatics. 25, 17, p. 2283-2285 3 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1009 Scopus citations
    • 2008

      DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

      Ley, T. J., Mardis, E. R., Ding, L., Fulton, B., McLellan, M. D., Chen, K., Dooling, D., Dunford-Shore, B. H., McGrath, S., Hickenbotham, M., Cook, L., Abbott, R., Larson, D. E., Koboldt, D. C., Pohl, C., Smith, S., Hawkins, A., Abbott, S., Locke, D. & Hillier, L. W. & 28 others, Miner, T., Fulton, L., Magrini, V., Wylie, T., Glasscock, J., Conyers, J., Sander, N., Shi, X., Osborne, J. R., Minx, P., Gordon, D., Chinwalla, A., Zhao, Y., Ries, R. E., Payton, J. E., Westervelt, P., Tomasson, M. H., Watson, M., Baty, J., Ivanovich, J., Heath, S., Shannon, W. D., Nagarajan, R., Walter, M. J., Link, D. C., Graubert, T. A., DiPersio, J. F. & Wilson, R. K., Nov 6 2008, In: Nature. 456, 7218, p. 66-72 7 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1061 Scopus citations