Tina Lindsay

Instructor in Genetics

    • Source: Scopus
    19982022

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    • Article

      A burst of segmental duplications in the genome of the African great ape ancestor

      Marques-Bonet, T., Kidd, J. M., Ventura, M., Graves, T. A., Cheng, Z., Hillier, L. W., Jiang, Z., Baker, C., Malfavon-Borja, R., Fulton, L. A., Alkan, C., Aksay, G., Girirajan, S., Siswara, P., Chen, L., Cardone, M. F., Navarro, A., Mardis, E. R., Wilson, R. K. & Eichler, E. E., Feb 12 2009, In: Nature. 457, 7231, p. 877-881 5 p.

      Research output: Contribution to journalArticlepeer-review

      163 Scopus citations
    • A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution

      Warren, W. C., Boggs, T. E., Borowsky, R., Carlson, B. M., Ferrufino, E., Gross, J. B., Hillier, L. D., Hu, Z., Keene, A. C., Kenzior, A., Kowalko, J. E., Tomlinson, C., Kremitzki, M., Lemieux, M. E., Graves-Lindsay, T., McGaugh, S. E., Miller, J. T., Mommersteeg, M. T. M., Moran, R. L., Peuß, R. & 8 others, Rice, E. S., Riddle, M. R., Sifuentes-Romero, I., Stanhope, B. A., Tabin, C. J., Thakur, S., Yamamoto, Y. & Rohner, N., Dec 2021, In: Nature communications. 12, 1, 1447.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      9 Scopus citations
    • A genome-wide comparison of recent chimpanzee and human segmental duplications

      Cheng, Z., Ventura, M., She, X., Khaitovich, P., Graves, T., Osoegawa, K., Church, D., DeJong, P., Wilson, R. K., Pääbo, S., Rocchi, M. & Eichler, E. E., Sep 1 2005, In: Nature. 437, 7055, p. 88-93 6 p.

      Research output: Contribution to journalArticlepeer-review

      294 Scopus citations
    • A genomic case study of mixed fibrolamellar hepatocellular carcinoma

      Griffith, O. L., M.Griffith, K.Krysiak, V.Magrini, A.Ramu, Z.L.Skidmore, J.Kunisaki, R.Austin, S.McGrath, J.Zhang, R.Demeter, T.Graves, J.M.Eldred, J.Walker, D.E.Larson, C.A.Maher, Y.Lin, W.Chapman, A.Mahadevan, R.Miksad & 3 others, I.Nasser, D.W.Hanto & E.R.Mardis, Jun 18 2016, In: Annals of Oncology. 27, 6, p. 1148-1154 7 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      14 Scopus citations
    • A high-resolution map of human evolutionary constraint using 29 mammals

      Lindblad-Toh, K., Garber, M., Zuk, O., Lin, M. F., Parker, B. J., Washietl, S., Kheradpour, P., Ernst, J., Jordan, G., Mauceli, E., Ward, L. D., Lowe, C. B., Holloway, A. K., Clamp, M., Gnerre, S., Alföldi, J., Beal, K., Chang, J., Clawson, H., Cuff, J. & 66 others, Di Palma, F., Fitzgerald, S., Flicek, P., Guttman, M., Hubisz, M. J., Jaffe, D. B., Jungreis, I., Kent, W. J., Kostka, D., Lara, M., Martins, A. L., Massingham, T., Moltke, I., Raney, B. J., Rasmussen, M. D., Robinson, J., Stark, A., Vilella, A. J., Wen, J., Xie, X., Zody, M. C., Worley, K. C., Kovar, C. L., Muzny, D. M., Gibbs, R. A., Warren, W. C., Mardis, E. R., Weinstock, G. M., Wilson, R. K., Birney, E., Margulies, E. H., Herrero, J., Green, E. D., Haussler, D., Siepel, A., Goldman, N., Pollard, K. S., Pedersen, J. S., Lander, E. S., Kellis, M., Baldwin, J., Bloom, T., Chin, C. W., Heiman, D., Nicol, R., Nusbaum, C., Young, S., Wilkinson, J., Cree, A., Dihn, H. H., Fowler, G., Jhangiani, S., Joshi, V., Lee, S., Lewis, L. R., Nazareth, L. V., Okwuonu, G., Santibanez, J., Delehaunty, K., Dooling, D., Fronik, C., Fulton, L., Fulton, B., Graves, T., Minx, P. & Sodergren, E., Oct 27 2011, In: Nature. 478, 7370, p. 476-482 7 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      719 Scopus citations
    • A human genome structural variation sequencing resource reveals insights into mutational mechanisms

      Kidd, J. M., Graves, T., Newman, T. L., Fulton, R., Hayden, H. S., Malig, M., Kallicki, J., Kaul, R., Wilson, R. K. & Eichler, E. E., Nov 24 2010, In: Cell. 143, 5, p. 837-847 11 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      196 Scopus citations
    • A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk

      Antonacci, F., Kidd, J. M., Marques-Bonet, T., Teague, B., Ventura, M., Girirajan, S., Alkan, C., Campbell, C. D., Vives, L., Malig, M., Rosenfeld, J. A., Ballif, B. C., Shaffer, L. G., Graves, T. A., Wilson, R. K., Schwartz, D. C. & Eichler, E. E., Sep 2010, In: Nature Genetics. 42, 9, p. 745-751 7 p.

      Research output: Contribution to journalArticlepeer-review

      77 Scopus citations
    • Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

      Margulies, E. H., Cooper, G. M., Asimenos, G., Thomas, D. J., Dewey, C. N., Siepel, A., Birney, E., Keefe, D., Schwartz, A. S., Hou, M., Taylor, J., Nikolaev, S., Montoya-Burgos, J. I., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Brown, J. B., Bickel, P., Holmes, I. & 57 others, Mullikin, J. C., Ureta-Vidal, A., Paten, B., Stone, E. A., Rosenbloom, K. R., Kent, W. J., Antonarakis, S. E., Batzoglou, S., Goldman, N., Hardison, R., Haussler, D., Miller, W., Pachter, L., Green, E. D., Sidow, A., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V. B., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Hinrichs, A., Trumbower, H., Clawson, H., Zweig, A., Kuhn, R. M., Barber, G., Harte, R., Karolchik, D., Field, M. A., Moore, R. A., Mathewson, C. A., Schein, J. E. & Marra, M. A., Jun 2007, In: Genome research. 17, 6, p. 760-774 15 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      166 Scopus citations
    • Analysis of human mRNAs with the reference genome sequence reveals potential errors, polymorphisms, and RNA editing

      Furey, T. S., Diekhans, M., Lu, Y., Graves, T. A., Oddy, L., Randall-Maher, J., Hillier, L. D. W., Wilson, R. K. & Haussler, D., Oct 2004, In: Genome research. 14, 10 B, p. 2034-2040 7 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      23 Scopus citations
    • A new chicken genome assembly provides insight into avian genome structure

      Warren, W. C., Hillier, L. D. W., Tomlinson, C., Minx, P., Kremitzki, M., Graves, T., Markovic, C., Bouk, N., Pruitt, K. D., Thibaud-Nissen, F., Schneider, V., Mansour, T. A., Brown, C. T., Zimin, A., Hawken, R., Abrahamsen, M., Pyrkosz, A. B., Morisson, M., Fillon, V., Vignal, A. & 12 others, Chow, W., Howe, K., Fulton, J. E., Miller, M. M., Lovell, P., Mello, C. V., Wirthlin, M., Mason, A. S., Kuo, R., Burt, D. W., Dodgson, J. B. & Cheng, H. H., 2017, In: G3: Genes, Genomes, Genetics. 7, 1, p. 109-117 9 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      133 Scopus citations
    • A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism

      Buckley, R. M., Davis, B. W., Brashear, W. A., Farias, F. H. G., Kuroki, K., Graves, T., Hillier, L. D. W., Kremitzki, M., Li, G., Middleton, R. P., Minx, P., Tomlinson, C., Lyons, L. A., Murphy, W. J. & Warren, W. C., Oct 22 2020, In: PLoS genetics. 16, 10, e1008926.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      29 Scopus citations
    • A physical map of the chicken genome

      Wallis, J. W., Aerts, J., Groenen, M. A. M., Crooljmans, R. P. M. A., Layman, D., Graves, T. A., Scheer, D. E., Kremitzki, C., Fedele, M. J., Mudd, N. K., Cardenas, M., Higginbotham, J., Carter, J., McGrane, R., Gaige, T., Mead, K., Walker, J., Albracht, D., Davito, J., Yang, S. P. & 18 others, Leong, S., Chinwalla, A., Sekhon, M., Wylie, K., Dodgson, J., Romanov, M. N., Cheng, H., De Jong, P. J., Osoegawa, K., Nefedov, M., Zhang, H., McPherson, J. D., Krzywinski, M., Scheln, J., Hillier, L. D., Mardis, E. R., Wilson, R. K. & Warren, W. C., Dec 9 2004, In: Nature. 432, 7018, p. 761-764 4 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      154 Scopus citations
    • Avian W and mammalian y chromosomes convergently retained dosage-sensitive regulators

      Bellott, D. W., Skaletsky, H., Cho, T. J., Brown, L., Locke, D., Chen, N., Galkina, S., Pyntikova, T., Koutseva, N., Graves, T., Kremitzki, C., Warren, W. C., Clark, A. G., Gaginskaya, E., Wilson, R. K. & Page, D. C., Mar 1 2017, In: Nature Genetics. 49, 3, p. 387-394 8 p.

      Research output: Contribution to journalArticlepeer-review

      78 Scopus citations
    • Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

      Veyrunes, F., Waters, P. D., Miethke, P., Rens, W., McMillan, D., Alsop, A. E., Grützner, F., Deakin, J. E., Whittington, C. M., Schatzkamer, K., Kremitzki, C. L., Graves, T., Ferguson-Smith, M. A., Warren, W. & Marshall Graves, J. A., Jun 2008, In: Genome research. 18, 6, p. 965-973 9 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      239 Scopus citations
    • Characterization of missing human genome sequences and copy-number polymorphic insertions

      Kidd, J. M., Sampas, N., Antonacci, F., Graves, T., Fulton, R., Hayden, H. S., Alkan, C., Malig, M., Ventura, M., Giannuzzi, G., Kallicki, J., Anderson, P., Tsalenko, A., Yamada, N. A., Tsang, P., Kaul, R., Wilson, R. K., Bruhn, L. & Eichler, E. E., May 2010, In: Nature Methods. 7, 5, p. 365-371 7 p.

      Research output: Contribution to journalArticlepeer-review

      106 Scopus citations
    • Characterizing the chromosomes of the platypus (Ornithorhynchus anatinus)

      McMillan, D., Miethke, P., Alsop, A. E., Rens, W., O'Brien, P., Trifonov, V., Veyrunes, F., Schatzkamer, K., Kremitzki, C. L., Graves, T., Warren, W., Grützner, F., Ferguson-Smith, M. A. & Graves, J. A. M., Dec 2007, In: Chromosome Research. 15, 8, p. 961-974 14 p.

      Research output: Contribution to journalArticlepeer-review

      13 Scopus citations
    • Characterizing the Major Structural Variant Alleles of the Human Genome

      Audano, P. A., Sulovari, A., Graves-Lindsay, T. A., Cantsilieris, S., Sorensen, M., Welch, A. M. E., Dougherty, M. L., Nelson, B. J., Shah, A., Dutcher, S. K., Warren, W. C., Magrini, V., McGrath, S. D., Li, Y. I., Wilson, R. K. & Eichler, E. E., Jan 24 2019, In: Cell. 176, 3, p. 663-675.e19

      Research output: Contribution to journalArticlepeer-review

      Open Access
      172 Scopus citations
    • Chimpanzee and human y chromosomes are remarkably divergent in structure and gene content

      Hughes, J. F., Skaletsky, H., Pyntikova, T., Graves, T. A., Van Daalen, S. K. M., Minx, P. J., Fulton, R. S., McGrath, S. D., Locke, D. P., Friedman, C., Trask, B. J., Mardis, E. R., Warren, W. C., Repping, S., Rozen, S., Wilson, R. K. & Page, D. C., Jan 28 2010, In: Nature. 463, 7280, p. 536-539 4 p.

      Research output: Contribution to journalArticlepeer-review

      257 Scopus citations
    • Comparative and demographic analysis of orang-utan genomes

      Locke, D. P., Hillier, L. W., Warren, W. C., Worley, K. C., Nazareth, L. V., Muzny, D. M., Yang, S. P., Wang, Z., Chinwalla, A. T., Minx, P., Mitreva, M., Cook, L., Delehaunty, K. D., Fronick, C., Schmidt, H., Fulton, L. A., Fulton, R. S., Nelson, J. O., Magrini, V., Pohl, C. & 81 others, Graves, T. A., Markovic, C., Cree, A., Dinh, H. H., Hume, J., Kovar, C. L., Fowler, G. R., Lunter, G., Meader, S., Heger, A., Ponting, C. P., Marques-Bonet, T., Alkan, C., Chen, L., Cheng, Z., Kidd, J. M., Eichler, E. E., White, S., Searle, S., Vilella, A. J., Chen, Y., Flicek, P., Ma, J., Raney, B., Suh, B., Burhans, R., Herrero, J., Haussler, D., Faria, R., Fernando, O., Darré, F., Farré, D., Gazave, E., Oliva, M., Navarro, A., Roberto, R., Capozzi, O., Archidiacono, N., Valle, G. D., Purgato, S., Rocchi, M., Konkel, M. K., Walker, J. A., Ullmer, B., Batzer, M. A., Smit, A. F. A., Hubley, R., Casola, C., Schrider, D. R., Hahn, M. W., Quesada, V., Puente, X. S., Ordõez, G. R., Ĺpez-Otín, C., Vinar, T., Brejova, B., Ratan, A., Harris, R. S., Miller, W., Kosiol, C., Lawson, H. A., Taliwal, V., Martins, A. L., Siepel, A., Roychoudhury, A., Ma, X., Degenhardt, J., Bustamante, C. D., Gutenkunst, R. N., Mailund, T., Dutheil, J. Y., Hobolth, A., Schierup, M. H., Ryder, O. A., Yoshinaga, Y., De Jong, P. J., Weinstock, G. M., Rogers, J., Mardis, E. R., Gibbs, R. A. & Wilson, R. K., Jan 27 2011, In: Nature. 469, 7331, p. 529-533 5 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      364 Scopus citations
    • Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation

      Watson, C. T., Steinberg, K. M., Huddleston, J., Warren, R. L., Malig, M., Schein, J., Willsey, A. J., Joy, J. B., Scott, J. K., Graves, T. A., Wilson, R. K., Holt, R. A., Eichler, E. E. & Breden, F., Apr 4 2013, In: American journal of human genetics. 92, 4, p. 530-546 17 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      138 Scopus citations
    • Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee

      Hughes, J. F., Skaletsky, H., Pyntikova, T., Minx, P. J., Graves, T., Rozen, S., Wilson, R. K. & Page, D. C., Sep 1 2005, In: Nature. 437, 7055, p. 101-104 4 p.

      Research output: Contribution to journalArticlepeer-review

      139 Scopus citations
    • Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition

      Bellott, D. W., Skaletsky, H., Pyntikova, T., Mardis, E. R., Graves, T., Kremitzki, C., Brown, L. G., Rozen, S., Warren, W. C., Wilson, R. K. & Page, D. C., Jul 29 2010, In: Nature. 466, 7306, p. 612-616 5 p.

      Research output: Contribution to journalArticlepeer-review

      145 Scopus citations
    • Defensins and the convergent evolution of platypus and reptile venom genes

      Whittington, C. M., Papenfuss, A. T., Bansal, P., Torres, A. M., Wong, E. S. W., Deakin, J. E., Graves, T., Alsop, A., Schatzkamer, K., Kremitzki, C., Ponting, C. P., Temple-Smith, P., Warren, W. C., Kuchel, P. W. & Belov, K., Jun 2008, In: Genome research. 18, 6, p. 986-994 9 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      100 Scopus citations
    • Detailed analysis of a contiguous 22-Mb region of the maize genome

      Wei, F., Stein, J. C., Liang, C., Zhang, J., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D., Currie, J., Lin, J. & 35 others, Kim, H. R., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K. & Wing, R. A., Nov 2009, In: PLoS genetics. 5, 11, e1000728.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      38 Scopus citations
    • Discovery and genotyping of structural variation from long-read haploid genome sequence data

      Huddleston, J., Chaisson, M. J. P., Steinberg, K. M., Warren, W., Hoekzema, K., Gordon, D., Graves-Lindsay, T. A., Munson, K. M., Kronenberg, Z. N., Vives, L., Peluso, P., Boitano, M., Chin, C. S., Korlach, J., Wilson, R. K. & Eichler, E. E., May 2017, In: Genome research. 27, 5, p. 677-685 9 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      176 Scopus citations
    • Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

      Schneider, V. A., Graves-Lindsay, T., Howe, K., Bouk, N., Chen, H. C., Kitts, P. A., Murphy, T. D., Pruitt, K. D., Thibaud-Nissen, F., Albracht, D., Fulton, R. S., Kremitzki, M., Magrini, V., Markovic, C., McGrath, S., Steinberg, K. M., Auger, K., Chow, W., Collins, J., Harden, G. & 18 others, Hubbard, T., Pelan, S., Simpson, J. T., Threadgold, G., Torrance, J., Wood, J. M., Clarke, L., Koren, S., Boitano, M., Peluso, P., Li, H., Chin, C. S., Phillippy, A. M., Durbin, R., Wilson, R. K., Flicek, P., Eichler, E. E. & Church, D. M., May 2017, In: Genome research. 27, 5, p. 849-864 16 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      273 Scopus citations
    • Evolutionary toggling of the MAPT 17q21.31 inversion region

      Zody, M. C., Jiang, Z., Fung, H. C., Antonacci, F., Hillier, L. D. W., Cardone, M. F., Graves, T. A., Kidd, J. M., Cheng, Z., Abouelleil, A., Chen, L., Wallis, J., Glasscock, J., Wilson, R. K., Reily, A. D., Duckworth, J., Ventura, M., Hardy, J., Warren, W. C. & Eichler, E. E., Sep 2008, In: Nature Genetics. 40, 9, p. 1076-1083 8 p.

      Research output: Contribution to journalArticlepeer-review

      127 Scopus citations
    • Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication

      Dennis, M. Y., Nuttle, X., Sudmant, P. H., Antonacci, F., Graves, T. A., Nefedov, M., Rosenfeld, J. A., Sajjadian, S., Malig, M., Kotkiewicz, H., Curry, C. J., Shafer, S., Shaffer, L. G., De Jong, P. J., Wilson, R. K. & Eichler, E. E., May 11 2012, In: Cell. 149, 4, p. 912-922 11 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      243 Scopus citations
    • Familial long-read sequencing increases yield of de novo mutations

      Noyes, M. D., Harvey, W. T., Porubsky, D., Sulovari, A., Li, R., Rose, N. R., Audano, P. A., Munson, K. M., Lewis, A. P., Hoekzema, K., Mantere, T., Graves-Lindsay, T. A., Sanders, A. D., Goodwin, S., Kramer, M., Mokrab, Y., Zody, M. C., Hoischen, A., Korbel, J. O., McCombie, W. R. & 1 others, Eichler, E. E., Apr 7 2022, In: American journal of human genetics. 109, 4, p. 631-646 16 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
    • Finished sequence and assembly of the DUF1220-rich 1q21 region using a haploid human genome

      O'Bleness, M., Searles, V. B., Dickens, C. M., Astling, D., Albracht, D., Mak, A. C. Y., Lai, Y. Y. Y., Lin, C., Chu, C., Graves, T., Kwok, P. Y., Wilson, R. K. & Sikela, J. M., May 20 2014, In: BMC genomics. 15, 1, 387.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      29 Scopus citations
    • Finishing the euchromatic sequence of the human genome

      International Human Genome Sequencing Consortium, Oct 21 2004, In: Nature. 431, 7011, p. 931-945 15 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      3374 Scopus citations
    • Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome

      Pearks Wilkerson, A. J., Raudsepp, T., Graves, T., Albracht, D., Warren, W., Chowdhary, B. P., Skow, L. C. & Murphy, W. J., Nov 2008, In: Genomics. 92, 5, p. 329-338 10 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      40 Scopus citations
    • Gene duplication and fragmentation in the zebra finch major histocompatibility complex

      Balakrishnan, C. N., Ekblom, R., Völker, M., Westerdahl, H., Godinez, R., Kotkiewicz, H., Burt, D. W., Graves, T., Griffin, D. K., Warren, W. C. & Edwards, S. V., Apr 1 2010, In: BMC Biology. 8, 29.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      108 Scopus citations
    • Generation and annotation of the DNA sequences of human chromosomes 2 and 4

      Hillier, L. D. W., Graves, T. A., Fulton, R. S., Fulton, L. A., Pepin, K. H., Minx, P., Wagner-McPherson, C., Layman, D., Wylie, K., Sekhon, M., Becker, M. C., Fewell, G. A., Delehaunty, K. D., Miner, T. L., Nash, W. E., Kremitzki, C., Oddy, L., Du, H., Sun, H., Bradshaw-Cordum, H. & 102 others, Ali, J., Carter, J., Cordes, M., Harris, A., Isak, A., Van Brunt, A., Nguyen, C., Du, F., Courtney, L., Kalicki, J., Ozersky, P., Abbott, S., Armstrong, J., Belter, E. A., Caruso, L., Cedroni, M., Cotton, M., Davidson, T., Desai, A., Elliott, G., Erb, T., Fronick, C., Gaige, T., Haakenson, W., Haglund, K., Holmes, A., Harkins, R., Kim, K., Kruchowski, S. S., Strong, C. M., Grewal, N., Goyea, E., Hou, S., Levy, A., Martinka, S., Mead, K., McLellan, M. D., Meyer, R., Randall-Maher, J., Tomlinson, C., Dauphin-Kohlberg, S., Kozlowicz-Reilly, A., Shah, N., Swearengen-Shahid, S., Snider, J., Strong, J. T., Thompson, J., Yoakum, M., Leonard, S., Pearman, C., Trani, L., Radionenko, M., Waligorski, J. E., Wang, C., Rock, S. M., Tin-Wollam, A. M., Maupin, R., Latreille, P., Wendl, M. C., Yang, S. P., Pohl, C., Wallis, J. W., Spieth, J., Bieri, T. A., Berkowicz, N., Nelson, J. O., Osborne, J., Ding, L., Meyer, R., Sabo, A., Shotland, Y., Sinha, P., Wohldmann, P. E., Cook, L. L., Hickenbotham, M. T., Eldred, J., Williams, D., Jones, T. A., She, X., Ciccarelli, F. D., Izaurralde, E., Taylor, J., Schmutz, J., Myers, R. M., Cox, D. R., Huang, X., McPherson, J. D., Mardis, E. R., Clifton, S. W., Warren, W. C., Chinwalla, A. T., Eddy, S. R., Marra, M. A., Ovcharenko, I., Furey, T. S., Miller, W., Eichler, E. E., Bork, P., Suyama, M., Torrents, D., Waterston, R. H. & Wilson, R. K., Apr 7 2005, In: Nature. 434, 7034, p. 724-731 8 p.

      Research output: Contribution to journalArticlepeer-review

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      66 Scopus citations
    • Genome analysis of the platypus reveals unique signatures of evolution

      Warren, W. C., Hillier, L. D. W., Marshall Graves, J. A., Birney, E., Ponting, C. P., Grützner, F., Belov, K., Miller, W., Clarke, L., Chinwalla, A. T., Yang, S. P., Heger, A., Locke, D. P., Miethke, P., Waters, P. D., Veyrunes, F., Fulton, L., Fulton, B., Graves, T., Wallis, J. & 82 others, Puente, X. S., López-Otín, C., Ordóñez, G. R., Eichler, E. E., Chen, L., Cheng, Z., Deakin, J. E., Alsop, A., Thompson, K., Kirby, P., Papenfuss, A. T., Wakefield, M. J., Olender, T., Lancet, D., Huttley, G. A., Smit, A. F. A., Pask, A., Temple-Smith, P., Batzer, M. A., Walker, J. A., Konkel, M. K., Harris, R. S., Whittington, C. M., Wong, E. S. W., Gemmell, N. J., Buschiazzo, E., Vargas Jentzsch, I. M., Merkel, A., Schmitz, J., Zemann, A., Churakov, G., Ole Kriegs, J., Brosius, J., Murchison, E. P., Sachidanandam, R., Smith, C., Hannon, G. J., Tsend-Ayush, E., McMillan, D., Attenborough, R., Rens, W., Ferguson-Smith, M., Lefèvre, C. M., Sharp, J. A., Nicholas, K. R., Ray, D. A., Kube, M., Reinhardt, R., Pringle, T. H., Taylor, J., Jones, R. C., Nixon, B., Dacheux, J. L., Niwa, H., Sekita, Y., Huang, X., Stark, A., Kheradpour, P., Kellis, M., Flicek, P., Chen, Y., Webber, C., Hardison, R., Nelson, J., Hallsworth-Pepin, K., Delehaunty, K., Markovic, C., Minx, P., Feng, Y., Kremitzki, C., Mitreva, M., Glasscock, J., Wylie, T., Wohldmann, P., Thiru, P., Nhan, M. N., Pohl, C. S., Smith, S. M., Hou, S., Renfree, M. B., Mardis, E. R. & Wilson, R. K., May 8 2008, In: Nature. 453, 7192, p. 175-183 9 p.

      Research output: Contribution to journalArticlepeer-review

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      526 Scopus citations
    • Genomic pathology of sle-associated copy-number variation at the FCGR2C/FCGR3B/FCGR2B locus

      Mueller, M., Barros, P., Witherden, A. S., Roberts, A. L., Zhang, Z., Schaschl, H., Yu, C. Y., Hurles, M. E., Schaffner, C., Floto, R. A., Game, L., Steinberg, K. M., Wilson, R. K., Graves, T. A., Eichler, E. E., Cook, H. T., Vyse, T. J. & Aitman, T. J., Jan 10 2013, In: American journal of human genetics. 92, 1, p. 28-40 13 p.

      Research output: Contribution to journalArticlepeer-review

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      43 Scopus citations
    • Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

      Ventura, M., Catacchio, C. R., Alkan, C., Marques-Bonet, T., Sajjadian, S., Graves, T. A., Hormozdiari, F., Navarro, A., Malig, M., Baker, C., Lee, C., Turner, E. H., Chen, L., Kidd, J. M., Archidiacono, N., Shendure, J., Wilson, R. K. & Eichler, E. E., Oct 2011, In: Genome research. 21, 10, p. 1640-1649 10 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      53 Scopus citations
    • Haplotype sorting using human fosmid clone end-sequence pairs

      Kidd, J. M., Cheng, Z., Graves, T., Fulton, B., Wilson, R. K. & Eichler, E. E., Dec 2008, In: Genome research. 18, 12, p. 2016-2023 8 p.

      Research output: Contribution to journalArticlepeer-review

      21 Scopus citations
    • Higher-order genome organization in platypus and chicken sperm and repositioning of sex chromosomes during mammalian evolution

      Tsend-Ayush, E., Dodge, N., Mohr, J., Casey, A., Himmelbauer, H., Kremitzki, C. L., Schatzkamer, K., Graves, T., Warren, W. C. & Griützner, F., 2009, In: Chromosoma. 118, 1, p. 53-69 17 p.

      Research output: Contribution to journalArticlepeer-review

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      19 Scopus citations
    • High-resolution comparative analysis of great ape genomes

      Kronenberg, Z. N., Fiddes, I. T., Gordon, D., Murali, S., Cantsilieris, S., Meyerson, O. S., Underwood, J. G., Nelson, B. J., Chaisson, M. J. P., Dougherty, M. L., Munson, K. M., Hastie, A. R., Diekhans, M., Hormozdiari, F., Lorusso, N., Hoekzema, K., Qiu, R., Clark, K., Raja, A., Welch, A. M. E. & 24 others, Sorensen, M., Baker, C., Fulton, R. S., Armstrong, J., Graves-Lindsay, T. A., Denli, A. M., Hoppe, E. R., Hsieh, P. H., Hill, C. M., Pang, A. W. C., Lee, J., Lam, E. T., Dutcher, S. K., Gage, F. H., Warren, W. C., Shendure, J., Haussler, D., Schneider, V. A., Cao, H., Ventura, M., Wilson, R. K., Paten, B., Pollen, A. & Eichler, E. E., Jun 8 2018, In: Science. 360, 6393, eaar6343.

      Research output: Contribution to journalArticlepeer-review

      149 Scopus citations
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

      Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 291 others, Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F. S., Dekker, J., Lieb, J. D., Tullius, T. D., Crawford, G. E., Sunyaev, S., Noble, W. S., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I. L., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H. A., Sekinger, E. A., Lagarde, J., Abril, J. F., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J. S., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M. C., Thomas, D. J., Weirauch, M. T., Gilbert, J., Drenkow, J., Bell, I., Zhao, X., Srinivasan, K. G., Sung, W. K., Ooi, H. S., Chiu, K. P., Foissac, S., Alioto, T., Brent, M., Pachter, L., Tress, M. L., Valencia, A., Choo, S. W., Choo, C. Y., Ucla, C., Manzano, C., Wyss, C., Cheung, E., Clark, T. G., Brown, J. B., Ganesh, M., Patel, S., Tammana, H., Chrast, J., Henrichsen, C. N., Kai, C., Kawai, J., Nagalakshmi, U., Wu, J., Lian, Z., Lian, J., Newburger, P., Zhang, X., Bickel, P., Mattick, J. S., Carninci, P., Hayashizaki, Y., Weissman, S., Hubbard, T., Myers, R. M., Rogers, J., Stadler, P. F., Lowe, T. M., Wei, C. L., Ruan, Y., Struhl, K., Gerstein, M., Antonarakis, S. E., Fu, Y., Green, E. D., Karaöz, U., Siepel, A., Taylor, J., Liefer, L. A., Wetterstrand, K. A., Good, P. J., Feingold, E. A., Guyer, M. S., Cooper, G. M., Asimenos, G., Dewey, C. N., Hou, M., Nikolaev, S., Montoya-Burgos, J. I., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Huang, H., Zhang, N. R., Holmes, I., Mullikin, J. C., Ureta-Vidal, A., Paten, B., Seringhaus, M., Church, D., Rosenbloom, K., Kent, W. J., Stone, E. A., Batzoglou, S., Goldman, N., Hardison, R. C., Haussler, D., Miller, W., Sidow, A., Trinklein, N. D., Zhang, Z. D., Barrera, L., Stuart, R., King, D. C., Ameur, A., Enroth, S., Bieda, M. C., Kim, J., Bhinge, A. A., Jiang, N., Liu, J., Yao, F., Vega, V. B., Lee, C. W. H., Ng, P., Yang, A., Moqtaderi, Z., Zhu, Z., Xu, X., Squazzo, S., Oberley, M. J., Inman, D., Singer, M. A., Richmond, T. A., Munn, K. J., Rada-Iglesias, A., Wallerman, O., Komorowski, J., Fowler, J. C., Couttet, P., Bruce, A. W., Dovey, O. M., Ellis, P. D., Langford, C. F., Nix, D. A., Euskirchen, G., Hartman, S., Urban, A. E., Kraus, P., Van Calcar, S., Heintzman, N., Hoon Kim, T., Wang, K., Qu, C., Hon, G., Luna, R., Glass, C. K., Rosenfeld, M. G., Aldred, S. F., Cooper, S. J., Halees, A., Lin, J. M., Shulha, H. P., Zhang, X., Xu, M., Haidar, J. N. S., Yu, Y., Iyer, V. R., Green, R. D., Wadelius, C., Farnham, P. J., Ren, B., Harte, R. A., Hinrichs, A. S., Trumbower, H., Clawson, H., Hillman-Jackson, J., Zweig, A. S., Smith, K., Thakkapallayil, A., Barber, G., Kuhn, R. M., Karolchik, D., Armengol, L., Bird, C. P., De Bakker, P. I. W., Kern, A. D., Lopez-Bigas, N., Martin, J. D., Stranger, B. E., Woodroffe, A., Davydov, E., Dimas, A., Eyras, E., Hallgrímsdóttir, I. B., Huppert, J., Zody, M. C., Abecasis, G. R., Estivill, X., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V. B., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Koriabine, M., Nefedov, M., Osoegawa, K., Yoshinaga, Y., Zhu, B. & De Jong, P. J., Jun 14 2007, In: Nature. 447, 7146, p. 799-816 18 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      4009 Scopus citations
    • Independent specialization of the human and mouse X chromosomes for the male germ line

      Mueller, J. L., Skaletsky, H., Brown, L. G., Zaghlul, S., Rock, S., Graves, T., Auger, K., Warren, W. C., Wilson, R. K. & Page, D. C., Sep 2013, In: Nature Genetics. 45, 9, p. 1083-1087 5 p.

      Research output: Contribution to journalArticlepeer-review

      102 Scopus citations
    • Initial sequence of the chimpanzee genome and comparison with the human genome

      The Chimpanzee Sequencing and Analysis Consortium, Sep 1 2005, In: Nature. 437, 7055, p. 69-87 19 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      1702 Scopus citations
    • Initial sequencing and comparative analysis of the mouse genome

      Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., Antonarakis, S. E., Attwood, J., Baertsch, R., Bailey, J., Barlow, K., Beck, S., Berry, E., Birren, B., Bloom, T., Bork, P. & 202 others, Botcherby, M., Bray, N., Brent, M. R., Brown, D. G., Brown, S. D., Bult, C., Burton, J., Butler, J., Campbell, R. D., Carninci, P., Cawley, S., Chiaromonte, F., Chinwalla, A. T., Church, D. M., Clamp, M., Clee, C., Collins, F. S., Cook, L. L., Copley, R. R., Coulson, A., Couronne, O., Cuff, J., Curwen, V., Cutts, T., Daly, M., David, R., Davies, J., Delehaunty, K. D., Deri, J., Dermitzakis, E. T., Dewey, C., Dickens, N. J., Diekhans, M., Dodge, S., Dubchak, I., Dunn, D. M., Eddy, S. R., Elnitski, L., Emes, R. D., Eswara, P., Eyras, E., Felsenfeld, A., Fewell, G. A., Flicek, P., Foley, K., Frankel, W. N., Fulton, L. A., Fulton, R. S., Furey, T. S., Gage, D., Gibbs, R. A., Glusman, G., Gnerre, S., Goldman, N., Goodstadt, L., Grafham, D., Graves, T. A., Green, E. D., Gregory, S., Guigó, R., Guyer, M., Hardison, R. C., Haussler, D., Hayashizaki, Y., LaHillier, D. W., Hinrichs, A., Hlavina, W., Holzer, T., Hsu, F., Hua, A., Hubbard, T., Hunt, A., Jackson, I., Jaffe, D. B., Johnson, L. S., Jones, M., Jones, T. A., Joy, A., Kamal, M., Karlsson, E. K., Karolchik, D., Kasprzyk, A., Kawai, J., Keibler, E., Kells, C., Kent, W. J., Kirby, A., Kolbe, D. L., Korf, I., Kucherlapati, R. S., Kulbokas, E. J., Kulp, D., Landers, T., Leger, J. P., Leonard, S., Letunic, I., Levine, R., Li, J., Li, M., Lloyd, C., Lucas, S., Ma, B., Maglott, D. R., Mardis, E. R., Matthews, L., Mauceli, E., Mayer, J. H., McCarthy, M., McCombie, W. R., McLaren, S., McLay, K., McPherson, J. D., Meldrim, J., Meredith, B., Mesirov, J. P., Miller, W., Miner, T. L., Mongin, E., Montgomery, K. T., Morgan, M., Mott, R., Mullikin, J. C., Muzny, D. M., Nash, W. E., Nelson, J. O., Nhan, M. N., Nicol, R., Ning, Z., Nusbaum, C., O'Connor, M. J., Okazaki, Y., Oliver, K., Overton-Larty, E., Pachter, L., Parra, G., Pepin, K. H., Peterson, J., Pevzner, P., Plumb, R., Pohl, C. S., Poliakov, A., Ponce, T. C., Ponting, C. P., Potter, S., Quail, M., Reymond, A., Roe, B. A., Roskin, K. M., Rubin, E. M., Rust, A. G., Santos, R., Sapojnikov, V., Schultz, B., Schultz, J., Schwartz, M. S., Schwartz, S., Scott, C., Seaman, S., Searle, S., Sharpe, T., Sheridan, A., Shownkeen, R., Sims, S., Singer, J. B., Slater, G., Smit, A., Smith, D. R., Spencer, B., Stabenau, A., Stange-Thomann, N., Sugnet, C., Suyama, M., Tesler, G., Thompson, J., Torrents, D., Trevaskis, E., Tromp, J., Ucla, C., Ureta-Vidal, A., Vinson, J. P., von Niederhausern, A. C., Wade, C. M., Wall, M., Weber, R. J., Weiss, R. B., Wendl, M. C., West, A. P., Wetterstrand, K., Wheeler, R., Whelan, S., Wierzbowski, J., Willey, D., Williams, S., Wilson, R. K., Winter, E., Worley, K. C., Wyman, D., Yang, S., Yang, S. P., Zdobnov, E. M., Zody, M. C. & Lander, E. S., Dec 5 2002, In: Nature. 420, 6915, p. 520-562 43 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      5273 Scopus citations
    • Insights into hominid evolution from the gorilla genome sequence

      Scally, A., Dutheil, J. Y., Hillier, L. W., Jordan, G. E., Goodhead, I., Herrero, J., Hobolth, A., Lappalainen, T., Mailund, T., Marques-Bonet, T., McCarthy, S., Montgomery, S. H., Schwalie, P. C., Tang, Y. A., Ward, M. C., Xue, Y., Yngvadottir, B., Alkan, C., Andersen, L. N., Ayub, Q. & 51 others, Ball, E. V., Beal, K., Bradley, B. J., Chen, Y., Clee, C. M., Fitzgerald, S., Graves, T. A., Gu, Y., Heath, P., Heger, A., Karakoc, E., Kolb-Kokocinski, A., Laird, G. K., Lunter, G., Meader, S., Mort, M., Mullikin, J. C., Munch, K., O'Connor, T. D., Phillips, A. D., Prado-Martinez, J., Rogers, A. S., Sajjadian, S., Schmidt, D., Shaw, K., Simpson, J. T., Stenson, P. D., Turner, D. J., Vigilant, L., Vilella, A. J., Whitener, W., Zhu, B., Cooper, D. N., De Jong, P., Dermitzakis, E. T., Eichler, E. E., Flicek, P., Goldman, N., Mundy, N. I., Ning, Z., Odom, D. T., Ponting, C. P., Quail, M. A., Ryder, O. A., Searle, S. M., Warren, W. C., Wilson, R. K., Schierup, M. H., Rogers, J., Tyler-Smith, C. & Durbin, R., Mar 8 2012, In: Nature. 483, 7388, p. 169-175 7 p.

      Research output: Contribution to journalArticlepeer-review

      449 Scopus citations
    • Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

      Mohajeri, K., Cantsilieris, S., Huddleston, J., Nelson, B. J., Coe, B. P., Campbell, C. D., Baker, C., Harshman, L., Munson, K. M., Kronenberg, Z. N., Kremitzki, M., Raja, A., Catacchio, C. R., Graves, T. A., Wilson, R. K., Ventura, M. & Eichler, E. E., Nov 2016, In: Genome research. 26, 11, p. 1453-1467 15 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      17 Scopus citations
    • Lineage-specific biology revealed by a finished genome assembly of the mouse

      Church, D. M., Goodstadt, L., Hillier, L. W., Zody, M. C., Goldstein, S., She, X., Bult, C. J., Agarwala, R., Cherry, J. L., DiCuccio, M., Hlavina, W., Kapustin, Y., Meric, P., Maglott, D., Birtle, Z., Marques, A. C., Graves, T., Zhou, S., Teague, B., Potamousis, K. & 155 others, Churas, C., Place, M., Herschleb, J., Runnheim, R., Forrest, D., Amos-Landgraf, J., Schwartz, D. C., Cheng, Z., Lindblad-Toh, K., Eichler, E. E., Ponting, C. P., Muzny, D. M., Dugan-Rocha, S., Ding, Y., Scherer, S. E., Buhay, C. J., Cree, A., Hernandez, J., Holder, M., Hume, J., Jackson, L. R., Kovar, C., Lee, S. L., Lewis, L. R., Metzker, M. L., Narareth, L. V., Sabo, A., Sodergren, E., Gibbs, R. A., FitzGerald, M., Cook, A., Jaffe, D. B., Garber, M., Zimmer, A. R., Pirun, M., Russell, L., Sharpe, T., Chaturvedi, M. K. K., Wilkinson, J., LaButti, K., Yang, X., Bessette, D., Allen, N. R., Nguyen, C., Nguyen, T., Dunbar, C., Lubonja, R., Matthews, C., Liu, X., Benamara, M., Negash, T., Lokyitsang, T., Decktor, K., Piqani, B., Munson, G., Tenzin, P., Stone, S., Macdonald, P., Arachchi, H., Abouelleil, A., Lui, A., Priest, M., Gearin, G., Brown, A., Aftuck, L., Shea, T., Sykes, S., Berlin, A., Chu, J., Dooley, K., Hagopian, D., Hall, J., Hafez, N., Smith, C. L., Olandt, P., Miller, K., Ventkataraman, V., Rachupka, A., Dorris, L., Ayotte, L., Mabbitt, R., Erickson, J., Horn, A., An, P., Naylor, J. W., Settipalli, S., Lander, E. S., Wilson, R. K., Graves, T. A., Fulton, R. S., Rock, S. M., Chinwalla, A. T., Bernard, K., Courtney, L. P., Fronick, C., Fulton, L. L., O'Laughlin, M., Kremitzki, C. L., Minx, P. J., Nelson, J. O., Schatzkamer, K. L., Strong, C., Wollam, A. M., Weinstock, G. M., Yang, S. P., Rogers, J., Grafham, D., Humphray, S., Nicholson, C., Bird, C., Brown, A. J., Burton, J., Clee, C., Hunt, A., Jones, M. C., Lloyd, C., Matthews, L., Mclaren, K., Mclaren, S., McLay, K., Palmer, S. A., Plumb, R., Shownkeen, R., Sims, S., Quail, M. A., Whitehead, S. L., Willey, D. L., Deschamps, S., Kenton, S., Song, L., Do, T., Roe, B., Bouffard, G. G., Blakesley, R. W., Green, E. D., Kucherlapati, R., Grills, G., Li, L., Montgomery, K. T., Kramer, M., Speigel, L., McCombie, W. R., Lucas, S., Terry, A., Gordon, L., Stubbs, L., Denny, P., Brown, S. D. M., Mallon, A. M., Campbell, R. D., Botherby, M. R. M., Jackson, I. J., Rubenfield, M. J., Rogosin, A. M. & Smith, D. R., May 2009, In: PLoS biology. 7, 5, e1000112.

      Research output: Contribution to journalArticlepeer-review

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      352 Scopus citations
    • Long-read sequence and assembly of segmental duplications

      Vollger, M. R., Dishuck, P. C., Sorensen, M., Welch, A. M. E., Dang, V., Dougherty, M. L., Graves-Lindsay, T. A., Wilson, R. K., Chaisson, M. J. P. & Eichler, E. E., Jan 1 2019, In: Nature Methods. 16, 1, p. 88-94 7 p.

      Research output: Contribution to journalArticlepeer-review

      57 Scopus citations
    • Mammalian y chromosomes retain widely expressed dosage-sensitive regulators

      Bellott, D. W., Hughes, J. F., Skaletsky, H., Brown, L. G., Pyntikova, T., Cho, T. J., Koutseva, N., Zaghlul, S., Graves, T., Rock, S., Kremitzki, C., Fulton, R. S., Dugan, S., Ding, Y., Morton, D., Khan, Z., Lewis, L., Buhay, C., Wang, Q., Watt, J. & 9 others, Holder, M., Lee, S., Nazareth, L., Rozen, S., Muzny, D. M., Warren, W. C., Gibbs, R. A., Wilson, R. K. & Page, D. C., 2014, In: Nature. 508, 7497, p. 494-499 6 p.

      Research output: Contribution to journalArticlepeer-review

      367 Scopus citations
    • Mapping and sequencing of structural variation from eight human genomes

      Kidd, J. M., Cooper, G. M., Donahue, W. F., Hayden, H. S., Sampas, N., Graves, T., Hansen, N., Teague, B., Alkan, C., Antonacci, F., Haugen, E., Zerr, T., Yamada, N. A., Tsang, P., Newman, T. L., Tüzün, E., Cheng, Z., Ebling, H. M., Tusneem, N., David, R. & 26 others, Gillett, W., Phelps, K. A., Weaver, M., Saranga, D., Brand, A., Tao, W., Gustafson, E., McKernan, K., Chen, L., Malig, M., Smith, J. D., Korn, J. M., McCarroll, S. A., Altshuler, D. A., Peiffer, D. A., Dorschner, M., Stamatoyannopoulos, J., Schwartz, D., Nickerson, D. A., Mullikin, J. C., Wilson, R. K., Bruhn, L., Olson, M. V., Kaul, R., Smith, D. R. & Eichler, E. E., May 1 2008, In: Nature. 453, 7191, p. 56-64 9 p.

      Research output: Contribution to journalArticlepeer-review

      837 Scopus citations