Tina Lindsay

Instructor in Genetics

    • Source: Scopus
    19982022

    Research activity per year

    If you made any changes in Pure these will be visible here soon.
    Filter
    Article

    Search results

    • 1998

      Precise mapping and characterization of the RNA primers of DNA replication for a yeast hypersuppressive petite by in vitro capping with guanylyltransferase

      Graves, T., Dante, M., Eisenhour, L. & Christianson, T. W., Mar 1 1998, In: Nucleic acids research. 26, 5, p. 1309-1316 8 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      22 Scopus citations
    • 1999

      Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

      The European Union Arabidopsis Genome Sequencing Consortium & The Cold Spring Harbor, Washington University in St Louis and PE Biosystems Arabidopsis Sequencing Consortium, Dec 16 1999, In: Nature. 402, 6763, p. 769-777 9 p.

      Research output: Contribution to journalArticlepeer-review

      316 Scopus citations
    • The DNA sequence of human chromosome 22

      Dunham, I., Shimizu, N., Roe, B. A., Chissoe, S., Dunham, I., Hunt, A. R., Collins, J. E., Bruskiewich, R., Beare, D. M., Clamp, M., Smink, L. J., Ainscough, R., Almeida, J. P., Babbage, A., Bagguley, C., Bailey, J., Barlow, K., Bates, K. N., Beasley, O., Bird, C. P. & 201 others, Blakey, S., Bridgeman, A. M., Buck, D., Burgess, J., Burrill, W. D., Burton, J., Carder, C., Carter, N. P., Chen, Y., Clark, G., Clegg, S. M., Cobley, V., Cole, C. G., Collier, R. E., Connor, R. E., Conroy, D., Corby, N., Coville, G. J., Cox, A. V., Davis, J., Dawson, E., Dhami, P. D., Dockree, C., Dodsworth, S. J., Durbin, R. M., Ellington, A., Evans, K. L., Fey, J. M., Fleming, K., French, L., Garner, A. A., Gilbert, J. G. R., Goward, M. E., Grafham, D., Griffiths, M. N., Hall, C., Hall, R., Hall-Tamlyn, G., Heathcott, R. W., Ho, S., Holmes, S., Hunt, S. E., Jones, M. C., Kershaw, J., Kimberley, A., King, A., Laird, G. K., Langford, C. F., Leversha, M. A., Lloyd, C., Lloyd, D. M., Martyn, I. D., Mashreghi-Mohammadi, M., Matthews, L., Mccann, O. T., Mcclay, J., Mclaren, S., Mcmurray, A. A., Milne, S. A., Mortimore, B. J., Odell, C. N., Pavitt, R., Pearce, A. V., Pearson, D., Phillimore, B. J., Phillips, S. H., Plumb, R. W., Ramsay, H., Ramsey, Y., Rogers, L., Ross, M. T., Scott, C. E., Sehra, H. K., Skuce, C. D., Smalley, S., Smith, M. L., Soderlund, C., Spragon, L., Steward, C. A., Sulston, J. E., Swann, R. M., Vaudin, M., Wall, M., Wallis, J. M., Whiteley, M. N., Willey, D., Williams, L., Williams, S., Williamson, H., Wilmer, T. E., Wilming, L., Wright, C. L., Hubbard, T., Bentley, D. R., Beck, S., Rogers, J., Shimizu, N., Minoshima, S., Kawasaki, K., Sasaki, T., Asakawa, S., Kudoh, J., Shintani, A., Shibuya, K., Yoshizaki, Y., Aoki, N., Mitsuyama, S., Roe, B. A., Chen, F., Chu, L., Crabtree, J., Deschamps, S., Do, A., Do, T., Dorman, A., Fang, F., Fu, Y., Hu, P., Hua, A., Kenton, S., Lai, H., Lao, H. I., Lewis, J., Lewis, S., Lin, S. P., Loh, P., Malaj, E., Nguyen, T., Pan, H., Phan, S., Qi, S., Qian, Y., Ray, L., Ren, Q., Shaull, S., Sloan, D., Song, L., Wang, Q., Wang, Y., Wang, Z., White, J., Willingham, D., Wu, H., Yao, Z., Zhan, M., Zhang, G., Chissoe, S., Murray, J., Miller, N., Minx, P., Fulton, R., Johnson, D., Bemis, G., Bentley, D., Bradshaw, H., Bourne, S., Cordes, M., Du, Z., Fulton, L., Goela, D., Graves, T., Hawkins, J., Hinds, K., Kemp, K., Latreille, P., Layman, D., Ozersky, P., Rohlfing, T., Scheet, P., Walker, C., Wamsley, A., Wohldmann, P., Pepin, K., Nelson, J., Korf, I., Bedell, J. A., Hillier, L., Mardis, E., Waterston, R., Wilson, R., Emanuel, B. S., Shaikh, T., Kurahashi, H., Saitta, S., Budarf, M. L., Mcdermid, H. E., Johnson, A., Wong, A. C. C., Morrow, B. E., Edelmann, L., Kim, U. J., Shizuya, H., Simon, M. I., Dumanski, J. P., Peyrard, M., Kedra, D., Seroussi, E., Fransson, I., Tapia, I., Bruder, C. E. & O'Brien, K. P., Dec 2 1999, In: Nature. 402, 6761, p. 489-495 7 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      905 Scopus citations
    • 2000

      The complete sequence of a heterochromatic island from a higher eukaryote

      McCombie, W. R., De la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Yordan, C., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J. & 44 others, Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Dante, M., Pepin, K., Hillier, L. D., Nelson, J., Spieth, J., Simorowski, J., May, B., Ma, P., Preston, R., Vil, D., Lei, H. S., Shekher, M., Matero, A., Shah, R., Swaby, IK., O'Shaughnessy, A., Rodriguez, M., Hoffman, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Wilson, R. K. & Martienssen, R., Feb 4 2000, In: Cell. 100, 3, p. 377-386 10 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      111 Scopus citations
    • 2001

      Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis

      Cliften, P. F., Hillier, L. D. W., Fulton, L., Graves, T., Miner, T., Gish, W. R., Waterston, R. H. & Johnston, M., 2001, In: Genome research. 11, 7, p. 1175-1186 12 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      199 Scopus citations
    • 2002

      Initial sequencing and comparative analysis of the mouse genome

      Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., Antonarakis, S. E., Attwood, J., Baertsch, R., Bailey, J., Barlow, K., Beck, S., Berry, E., Birren, B., Bloom, T., Bork, P. & 202 others, Botcherby, M., Bray, N., Brent, M. R., Brown, D. G., Brown, S. D., Bult, C., Burton, J., Butler, J., Campbell, R. D., Carninci, P., Cawley, S., Chiaromonte, F., Chinwalla, A. T., Church, D. M., Clamp, M., Clee, C., Collins, F. S., Cook, L. L., Copley, R. R., Coulson, A., Couronne, O., Cuff, J., Curwen, V., Cutts, T., Daly, M., David, R., Davies, J., Delehaunty, K. D., Deri, J., Dermitzakis, E. T., Dewey, C., Dickens, N. J., Diekhans, M., Dodge, S., Dubchak, I., Dunn, D. M., Eddy, S. R., Elnitski, L., Emes, R. D., Eswara, P., Eyras, E., Felsenfeld, A., Fewell, G. A., Flicek, P., Foley, K., Frankel, W. N., Fulton, L. A., Fulton, R. S., Furey, T. S., Gage, D., Gibbs, R. A., Glusman, G., Gnerre, S., Goldman, N., Goodstadt, L., Grafham, D., Graves, T. A., Green, E. D., Gregory, S., Guigó, R., Guyer, M., Hardison, R. C., Haussler, D., Hayashizaki, Y., LaHillier, D. W., Hinrichs, A., Hlavina, W., Holzer, T., Hsu, F., Hua, A., Hubbard, T., Hunt, A., Jackson, I., Jaffe, D. B., Johnson, L. S., Jones, M., Jones, T. A., Joy, A., Kamal, M., Karlsson, E. K., Karolchik, D., Kasprzyk, A., Kawai, J., Keibler, E., Kells, C., Kent, W. J., Kirby, A., Kolbe, D. L., Korf, I., Kucherlapati, R. S., Kulbokas, E. J., Kulp, D., Landers, T., Leger, J. P., Leonard, S., Letunic, I., Levine, R., Li, J., Li, M., Lloyd, C., Lucas, S., Ma, B., Maglott, D. R., Mardis, E. R., Matthews, L., Mauceli, E., Mayer, J. H., McCarthy, M., McCombie, W. R., McLaren, S., McLay, K., McPherson, J. D., Meldrim, J., Meredith, B., Mesirov, J. P., Miller, W., Miner, T. L., Mongin, E., Montgomery, K. T., Morgan, M., Mott, R., Mullikin, J. C., Muzny, D. M., Nash, W. E., Nelson, J. O., Nhan, M. N., Nicol, R., Ning, Z., Nusbaum, C., O'Connor, M. J., Okazaki, Y., Oliver, K., Overton-Larty, E., Pachter, L., Parra, G., Pepin, K. H., Peterson, J., Pevzner, P., Plumb, R., Pohl, C. S., Poliakov, A., Ponce, T. C., Ponting, C. P., Potter, S., Quail, M., Reymond, A., Roe, B. A., Roskin, K. M., Rubin, E. M., Rust, A. G., Santos, R., Sapojnikov, V., Schultz, B., Schultz, J., Schwartz, M. S., Schwartz, S., Scott, C., Seaman, S., Searle, S., Sharpe, T., Sheridan, A., Shownkeen, R., Sims, S., Singer, J. B., Slater, G., Smit, A., Smith, D. R., Spencer, B., Stabenau, A., Stange-Thomann, N., Sugnet, C., Suyama, M., Tesler, G., Thompson, J., Torrents, D., Trevaskis, E., Tromp, J., Ucla, C., Ureta-Vidal, A., Vinson, J. P., von Niederhausern, A. C., Wade, C. M., Wall, M., Weber, R. J., Weiss, R. B., Wendl, M. C., West, A. P., Wetterstrand, K., Wheeler, R., Whelan, S., Wierzbowski, J., Willey, D., Williams, S., Wilson, R. K., Winter, E., Worley, K. C., Wyman, D., Yang, S., Yang, S. P., Zdobnov, E. M., Zody, M. C. & Lander, E. S., Dec 5 2002, In: Nature. 420, 6915, p. 520-562 43 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      5274 Scopus citations
    • 2003

      The DNA sequence of human chromosome 7

      Hillier, L. D. W., Fulton, R. S., Fulton, L. A., Graves, T. A., Pepin, K. H., Wagner-McPherson, C., Layman, D., Maas, J., Jaeger, S., Walker, R., Wylie, K., Sekhon, M., Becker, M. C., O'Laughlin, M. D., Schaller, M. E., Fewell, G. A., Delehaunty, K. D., Miner, T. L., Nash, W. E., Cordes, M. & 87 others, Du, H., Sun, H., Edwards, J., Bradshaw-Cordum, H., Ali, J., Andrews, S., Isak, A., Van Brunt, A., Nguyen, C., Du, F., Lamar, B., Courtney, L., Kalicki, J., Ozersky, P., Bielicki, L., Scott, K., Holmes, A., Harkins, R., Harris, A., Strong, C. M., Hou, S., Tomlinson, C., Dauphin-Kohlberg, S., Kozlowicz-Reilly, A., Leonard, S., Rohlfing, T., Rock, S. M., Tin-Wollam, A. M., Abbott, A., Minx, P., Maupin, R., Strowmatt, C., Latreille, P., Miller, N., Johnson, D., Murray, J., Woessner, J. P., Wendl, M. C., Yang, S. P., Schultz, B. R., Wallis, J. W., Spieth, J., Bieri, T. A., Nelson, J. O., Berkowicz, N., Wohldmann, P. E., Cook, L. L., Hickenbotham, M. T., Eldred, J., Williams, D., Bedell, J. A., Mardis, E. R., Clifton, S. W., Chissoe, S. L., Marra, M. A., Raymond, C., Haugen, E., Gillett, W., Zhou, Y., James, R., Phelps, K., Iadanoto, S., Bubb, K., Simms, E., Levy, R., Clendenning, J., Kaul, R., Kent, W. J., Furey, T. S., Baertsch, R. A., Brent, M. R., Keibler, E., Flicek, P., Borkk, P., Suyamak, M., Bailey, J. A., Portnoy, M. E., Torrentsk, D., Chinwalla, A. T., Gish, W. R., Eddy, S. R., McPherson, J. D., Olson, M. V., Eichler, E. E., Green, E. D., Waterston, R. H. & Wilson, R. K., Jul 10 2003, In: Nature. 424, 6945, p. 157-164 8 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      210 Scopus citations
    • The human genome: Genes, pseudogenes, and variation on chromosome 7

      Waterston, R. H., Hillier, L. W., Fulton, L. A., Fulton, R. S., Graves, T. A., Pepin, K. H., Bork, P., Suyama, M., Torrents, D., Chinwalla, A. T., Mardis, E. R., McPherson, J. D. & Wilson, R. K., Jan 1 2003, In: Cold Spring Harbor symposia on quantitative biology. 68, p. 13-22 10 p.

      Research output: Contribution to journalArticlepeer-review

    • The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

      Skaletsky, H., Kuroda-Kawaguchl, T., Minx, P. J., Cordum, H. S., Hlllier, L. D., Brown, L. G., Repplng, S., Pyntikova, T., All, J., Blerl, T., Chinwalla, A., Delehaunty, A., Du, H., Fewell, G., Fulton, L., Fulton, R., Graves, T., Hou, S. F., Latrielle, P., Leonard, S. & 19 others, Mardis, E., Maupin, R., McPherson, J., Miner, T., Nash, W., Nguyen, C., Ozersky, P., Pepin, K., Rock, S., Rohlfing, T., Scott, K., Schultz, B., Strong, C., Tin-Wollam, A., Yang, S. P., Waterston, R. H., Wllson, R. K., Rozen, S. & Page, D. C., Jun 19 2003, In: Nature. 423, 6942, p. 825-837 13 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      1544 Scopus citations
    • 2004

      Analysis of human mRNAs with the reference genome sequence reveals potential errors, polymorphisms, and RNA editing

      Furey, T. S., Diekhans, M., Lu, Y., Graves, T. A., Oddy, L., Randall-Maher, J., Hillier, L. D. W., Wilson, R. K. & Haussler, D., Oct 2004, In: Genome research. 14, 10 B, p. 2034-2040 7 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      23 Scopus citations
    • A physical map of the chicken genome

      Wallis, J. W., Aerts, J., Groenen, M. A. M., Crooljmans, R. P. M. A., Layman, D., Graves, T. A., Scheer, D. E., Kremitzki, C., Fedele, M. J., Mudd, N. K., Cardenas, M., Higginbotham, J., Carter, J., McGrane, R., Gaige, T., Mead, K., Walker, J., Albracht, D., Davito, J., Yang, S. P. & 18 others, Leong, S., Chinwalla, A., Sekhon, M., Wylie, K., Dodgson, J., Romanov, M. N., Cheng, H., De Jong, P. J., Osoegawa, K., Nefedov, M., Zhang, H., McPherson, J. D., Krzywinski, M., Scheln, J., Hillier, L. D., Mardis, E. R., Wilson, R. K. & Warren, W. C., Dec 9 2004, In: Nature. 432, 7018, p. 761-764 4 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      154 Scopus citations
    • Finishing the euchromatic sequence of the human genome

      International Human Genome Sequencing Consortium, Oct 21 2004, In: Nature. 431, 7011, p. 931-945 15 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      3378 Scopus citations
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

      International Chicken Genome Sequencing Consortium, Dec 9 2004, In: Nature. 432, 7018, p. 695-716 22 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      2102 Scopus citations
    • The structure and evolution of centromeric transition regions within the human genome

      She, X., Horvath, J. E., Jiang, Z., Liu, G., Furey, T. S., Christ, L., Clark, R., Graves, T., Gulden, C. L., Alkan, C., Bailey, J. A., Sahinalp, C., Rocchi, M., Haussler, D., Wilson, R. K., Miller, W., Schwartz, S. & Eichler, E. E., Aug 19 2004, In: Nature. 430, 7002, p. 857-864 8 p.

      Research output: Contribution to journalArticlepeer-review

      156 Scopus citations
    • 2005

      A genome-wide comparison of recent chimpanzee and human segmental duplications

      Cheng, Z., Ventura, M., She, X., Khaitovich, P., Graves, T., Osoegawa, K., Church, D., DeJong, P., Wilson, R. K., Pääbo, S., Rocchi, M. & Eichler, E. E., Sep 1 2005, In: Nature. 437, 7055, p. 88-93 6 p.

      Research output: Contribution to journalArticlepeer-review

      294 Scopus citations
    • Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee

      Hughes, J. F., Skaletsky, H., Pyntikova, T., Minx, P. J., Graves, T., Rozen, S., Wilson, R. K. & Page, D. C., Sep 1 2005, In: Nature. 437, 7055, p. 101-104 4 p.

      Research output: Contribution to journalArticlepeer-review

      139 Scopus citations
    • Generation and annotation of the DNA sequences of human chromosomes 2 and 4

      Hillier, L. D. W., Graves, T. A., Fulton, R. S., Fulton, L. A., Pepin, K. H., Minx, P., Wagner-McPherson, C., Layman, D., Wylie, K., Sekhon, M., Becker, M. C., Fewell, G. A., Delehaunty, K. D., Miner, T. L., Nash, W. E., Kremitzki, C., Oddy, L., Du, H., Sun, H., Bradshaw-Cordum, H. & 102 others, Ali, J., Carter, J., Cordes, M., Harris, A., Isak, A., Van Brunt, A., Nguyen, C., Du, F., Courtney, L., Kalicki, J., Ozersky, P., Abbott, S., Armstrong, J., Belter, E. A., Caruso, L., Cedroni, M., Cotton, M., Davidson, T., Desai, A., Elliott, G., Erb, T., Fronick, C., Gaige, T., Haakenson, W., Haglund, K., Holmes, A., Harkins, R., Kim, K., Kruchowski, S. S., Strong, C. M., Grewal, N., Goyea, E., Hou, S., Levy, A., Martinka, S., Mead, K., McLellan, M. D., Meyer, R., Randall-Maher, J., Tomlinson, C., Dauphin-Kohlberg, S., Kozlowicz-Reilly, A., Shah, N., Swearengen-Shahid, S., Snider, J., Strong, J. T., Thompson, J., Yoakum, M., Leonard, S., Pearman, C., Trani, L., Radionenko, M., Waligorski, J. E., Wang, C., Rock, S. M., Tin-Wollam, A. M., Maupin, R., Latreille, P., Wendl, M. C., Yang, S. P., Pohl, C., Wallis, J. W., Spieth, J., Bieri, T. A., Berkowicz, N., Nelson, J. O., Osborne, J., Ding, L., Meyer, R., Sabo, A., Shotland, Y., Sinha, P., Wohldmann, P. E., Cook, L. L., Hickenbotham, M. T., Eldred, J., Williams, D., Jones, T. A., She, X., Ciccarelli, F. D., Izaurralde, E., Taylor, J., Schmutz, J., Myers, R. M., Cox, D. R., Huang, X., McPherson, J. D., Mardis, E. R., Clifton, S. W., Warren, W. C., Chinwalla, A. T., Eddy, S. R., Marra, M. A., Ovcharenko, I., Furey, T. S., Miller, W., Eichler, E. E., Bork, P., Suyama, M., Torrents, D., Waterston, R. H. & Wilson, R. K., Apr 7 2005, In: Nature. 434, 7034, p. 724-731 8 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      66 Scopus citations
    • Initial sequence of the chimpanzee genome and comparison with the human genome

      The Chimpanzee Sequencing and Analysis Consortium, Sep 1 2005, In: Nature. 437, 7055, p. 69-87 19 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      1702 Scopus citations
    • Punctuated duplication seeding events during the evolution of human chromosome 2p11

      Horvath, J. E., Gulden, C. L., Vallente, R. U., Eichler, M. Y., Ventura, M., McPherson, J. D., Graves, T. A., Wilson, R. K., Schwartz, S., Rocchi, M. & Eichler, E. E., Jul 2005, In: Genome research. 15, 7, p. 914-927 14 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      30 Scopus citations
    • 2007

      Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

      Margulies, E. H., Cooper, G. M., Asimenos, G., Thomas, D. J., Dewey, C. N., Siepel, A., Birney, E., Keefe, D., Schwartz, A. S., Hou, M., Taylor, J., Nikolaev, S., Montoya-Burgos, J. I., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Brown, J. B., Bickel, P., Holmes, I. & 57 others, Mullikin, J. C., Ureta-Vidal, A., Paten, B., Stone, E. A., Rosenbloom, K. R., Kent, W. J., Antonarakis, S. E., Batzoglou, S., Goldman, N., Hardison, R., Haussler, D., Miller, W., Pachter, L., Green, E. D., Sidow, A., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V. B., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Hinrichs, A., Trumbower, H., Clawson, H., Zweig, A., Kuhn, R. M., Barber, G., Harte, R., Karolchik, D., Field, M. A., Moore, R. A., Mathewson, C. A., Schein, J. E. & Marra, M. A., Jun 2007, In: Genome research. 17, 6, p. 760-774 15 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      166 Scopus citations
    • Characterizing the chromosomes of the platypus (Ornithorhynchus anatinus)

      McMillan, D., Miethke, P., Alsop, A. E., Rens, W., O'Brien, P., Trifonov, V., Veyrunes, F., Schatzkamer, K., Kremitzki, C. L., Graves, T., Warren, W., Grützner, F., Ferguson-Smith, M. A. & Graves, J. A. M., Dec 2007, In: Chromosome Research. 15, 8, p. 961-974 14 p.

      Research output: Contribution to journalArticlepeer-review

      13 Scopus citations
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

      Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 291 others, Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F. S., Dekker, J., Lieb, J. D., Tullius, T. D., Crawford, G. E., Sunyaev, S., Noble, W. S., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I. L., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H. A., Sekinger, E. A., Lagarde, J., Abril, J. F., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J. S., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M. C., Thomas, D. J., Weirauch, M. T., Gilbert, J., Drenkow, J., Bell, I., Zhao, X., Srinivasan, K. G., Sung, W. K., Ooi, H. S., Chiu, K. P., Foissac, S., Alioto, T., Brent, M., Pachter, L., Tress, M. L., Valencia, A., Choo, S. W., Choo, C. Y., Ucla, C., Manzano, C., Wyss, C., Cheung, E., Clark, T. G., Brown, J. B., Ganesh, M., Patel, S., Tammana, H., Chrast, J., Henrichsen, C. N., Kai, C., Kawai, J., Nagalakshmi, U., Wu, J., Lian, Z., Lian, J., Newburger, P., Zhang, X., Bickel, P., Mattick, J. S., Carninci, P., Hayashizaki, Y., Weissman, S., Hubbard, T., Myers, R. M., Rogers, J., Stadler, P. F., Lowe, T. M., Wei, C. L., Ruan, Y., Struhl, K., Gerstein, M., Antonarakis, S. E., Fu, Y., Green, E. D., Karaöz, U., Siepel, A., Taylor, J., Liefer, L. A., Wetterstrand, K. A., Good, P. J., Feingold, E. A., Guyer, M. S., Cooper, G. M., Asimenos, G., Dewey, C. N., Hou, M., Nikolaev, S., Montoya-Burgos, J. I., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Huang, H., Zhang, N. R., Holmes, I., Mullikin, J. C., Ureta-Vidal, A., Paten, B., Seringhaus, M., Church, D., Rosenbloom, K., Kent, W. J., Stone, E. A., Batzoglou, S., Goldman, N., Hardison, R. C., Haussler, D., Miller, W., Sidow, A., Trinklein, N. D., Zhang, Z. D., Barrera, L., Stuart, R., King, D. C., Ameur, A., Enroth, S., Bieda, M. C., Kim, J., Bhinge, A. A., Jiang, N., Liu, J., Yao, F., Vega, V. B., Lee, C. W. H., Ng, P., Yang, A., Moqtaderi, Z., Zhu, Z., Xu, X., Squazzo, S., Oberley, M. J., Inman, D., Singer, M. A., Richmond, T. A., Munn, K. J., Rada-Iglesias, A., Wallerman, O., Komorowski, J., Fowler, J. C., Couttet, P., Bruce, A. W., Dovey, O. M., Ellis, P. D., Langford, C. F., Nix, D. A., Euskirchen, G., Hartman, S., Urban, A. E., Kraus, P., Van Calcar, S., Heintzman, N., Hoon Kim, T., Wang, K., Qu, C., Hon, G., Luna, R., Glass, C. K., Rosenfeld, M. G., Aldred, S. F., Cooper, S. J., Halees, A., Lin, J. M., Shulha, H. P., Zhang, X., Xu, M., Haidar, J. N. S., Yu, Y., Iyer, V. R., Green, R. D., Wadelius, C., Farnham, P. J., Ren, B., Harte, R. A., Hinrichs, A. S., Trumbower, H., Clawson, H., Hillman-Jackson, J., Zweig, A. S., Smith, K., Thakkapallayil, A., Barber, G., Kuhn, R. M., Karolchik, D., Armengol, L., Bird, C. P., De Bakker, P. I. W., Kern, A. D., Lopez-Bigas, N., Martin, J. D., Stranger, B. E., Woodroffe, A., Davydov, E., Dimas, A., Eyras, E., Hallgrímsdóttir, I. B., Huppert, J., Zody, M. C., Abecasis, G. R., Estivill, X., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V. B., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Koriabine, M., Nefedov, M., Osoegawa, K., Yoshinaga, Y., Zhu, B. & De Jong, P. J., Jun 14 2007, In: Nature. 447, 7146, p. 799-816 18 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      4012 Scopus citations
    • 2008

      Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

      Veyrunes, F., Waters, P. D., Miethke, P., Rens, W., McMillan, D., Alsop, A. E., Grützner, F., Deakin, J. E., Whittington, C. M., Schatzkamer, K., Kremitzki, C. L., Graves, T., Ferguson-Smith, M. A., Warren, W. & Marshall Graves, J. A., Jun 2008, In: Genome research. 18, 6, p. 965-973 9 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      239 Scopus citations
    • Defensins and the convergent evolution of platypus and reptile venom genes

      Whittington, C. M., Papenfuss, A. T., Bansal, P., Torres, A. M., Wong, E. S. W., Deakin, J. E., Graves, T., Alsop, A., Schatzkamer, K., Kremitzki, C., Ponting, C. P., Temple-Smith, P., Warren, W. C., Kuchel, P. W. & Belov, K., Jun 2008, In: Genome research. 18, 6, p. 986-994 9 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      100 Scopus citations
    • Evolutionary toggling of the MAPT 17q21.31 inversion region

      Zody, M. C., Jiang, Z., Fung, H. C., Antonacci, F., Hillier, L. D. W., Cardone, M. F., Graves, T. A., Kidd, J. M., Cheng, Z., Abouelleil, A., Chen, L., Wallis, J., Glasscock, J., Wilson, R. K., Reily, A. D., Duckworth, J., Ventura, M., Hardy, J., Warren, W. C. & Eichler, E. E., Sep 2008, In: Nature Genetics. 40, 9, p. 1076-1083 8 p.

      Research output: Contribution to journalArticlepeer-review

      127 Scopus citations
    • Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome

      Pearks Wilkerson, A. J., Raudsepp, T., Graves, T., Albracht, D., Warren, W., Chowdhary, B. P., Skow, L. C. & Murphy, W. J., Nov 2008, In: Genomics. 92, 5, p. 329-338 10 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      40 Scopus citations
    • Genome analysis of the platypus reveals unique signatures of evolution

      Warren, W. C., Hillier, L. D. W., Marshall Graves, J. A., Birney, E., Ponting, C. P., Grützner, F., Belov, K., Miller, W., Clarke, L., Chinwalla, A. T., Yang, S. P., Heger, A., Locke, D. P., Miethke, P., Waters, P. D., Veyrunes, F., Fulton, L., Fulton, B., Graves, T., Wallis, J. & 82 others, Puente, X. S., López-Otín, C., Ordóñez, G. R., Eichler, E. E., Chen, L., Cheng, Z., Deakin, J. E., Alsop, A., Thompson, K., Kirby, P., Papenfuss, A. T., Wakefield, M. J., Olender, T., Lancet, D., Huttley, G. A., Smit, A. F. A., Pask, A., Temple-Smith, P., Batzer, M. A., Walker, J. A., Konkel, M. K., Harris, R. S., Whittington, C. M., Wong, E. S. W., Gemmell, N. J., Buschiazzo, E., Vargas Jentzsch, I. M., Merkel, A., Schmitz, J., Zemann, A., Churakov, G., Ole Kriegs, J., Brosius, J., Murchison, E. P., Sachidanandam, R., Smith, C., Hannon, G. J., Tsend-Ayush, E., McMillan, D., Attenborough, R., Rens, W., Ferguson-Smith, M., Lefèvre, C. M., Sharp, J. A., Nicholas, K. R., Ray, D. A., Kube, M., Reinhardt, R., Pringle, T. H., Taylor, J., Jones, R. C., Nixon, B., Dacheux, J. L., Niwa, H., Sekita, Y., Huang, X., Stark, A., Kheradpour, P., Kellis, M., Flicek, P., Chen, Y., Webber, C., Hardison, R., Nelson, J., Hallsworth-Pepin, K., Delehaunty, K., Markovic, C., Minx, P., Feng, Y., Kremitzki, C., Mitreva, M., Glasscock, J., Wylie, T., Wohldmann, P., Thiru, P., Nhan, M. N., Pohl, C. S., Smith, S. M., Hou, S., Renfree, M. B., Mardis, E. R. & Wilson, R. K., May 8 2008, In: Nature. 453, 7192, p. 175-183 9 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      526 Scopus citations
    • Haplotype sorting using human fosmid clone end-sequence pairs

      Kidd, J. M., Cheng, Z., Graves, T., Fulton, B., Wilson, R. K. & Eichler, E. E., Dec 2008, In: Genome research. 18, 12, p. 2016-2023 8 p.

      Research output: Contribution to journalArticlepeer-review

      21 Scopus citations
    • Mapping and sequencing of structural variation from eight human genomes

      Kidd, J. M., Cooper, G. M., Donahue, W. F., Hayden, H. S., Sampas, N., Graves, T., Hansen, N., Teague, B., Alkan, C., Antonacci, F., Haugen, E., Zerr, T., Yamada, N. A., Tsang, P., Newman, T. L., Tüzün, E., Cheng, Z., Ebling, H. M., Tusneem, N., David, R. & 26 others, Gillett, W., Phelps, K. A., Weaver, M., Saranga, D., Brand, A., Tao, W., Gustafson, E., McKernan, K., Chen, L., Malig, M., Smith, J. D., Korn, J. M., McCarroll, S. A., Altshuler, D. A., Peiffer, D. A., Dorschner, M., Stamatoyannopoulos, J., Schwartz, D., Nickerson, D. A., Mullikin, J. C., Wilson, R. K., Bruhn, L., Olson, M. V., Kaul, R., Smith, D. R. & Eichler, E. E., May 1 2008, In: Nature. 453, 7191, p. 56-64 9 p.

      Research output: Contribution to journalArticlepeer-review

      837 Scopus citations
    • Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps

      Shoemaker, R. C., Grant, D., Olson, T., Warren, W. C., Wing, R., Yu, Y., Kim, H., Cregan, P., Joseph, B., Futrell-Griggs, M., Nelson, W., Davito, J., Walker, J., Wallis, J., Kremitski, C., Scheer, D., Clifton, S. W., Graves, T., Nguyen, H., Wu, X. & 8 others, Luo, M., Dvorak, J., Nelson, R., Cannon, S., Tomkins, J., Schmutz, J., Stacey, G. & Jackson, S., Apr 2008, In: Genome. 51, 4, p. 294-302 9 p.

      Research output: Contribution to journalArticlepeer-review

      40 Scopus citations
    • Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals

      Patel, V. S., Cooper, S. J. B., Deakin, J. E., Fulton, B., Graves, T., Warren, W. C., Wilson, R. K. & Graves, J. A. M., Aug 1 2008, In: BMC Biology. 6, 34.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      40 Scopus citations
    • 2009

      A burst of segmental duplications in the genome of the African great ape ancestor

      Marques-Bonet, T., Kidd, J. M., Ventura, M., Graves, T. A., Cheng, Z., Hillier, L. W., Jiang, Z., Baker, C., Malfavon-Borja, R., Fulton, L. A., Alkan, C., Aksay, G., Girirajan, S., Siswara, P., Chen, L., Cardone, M. F., Navarro, A., Mardis, E. R., Wilson, R. K. & Eichler, E. E., Feb 12 2009, In: Nature. 457, 7231, p. 877-881 5 p.

      Research output: Contribution to journalArticlepeer-review

      163 Scopus citations
    • Detailed analysis of a contiguous 22-Mb region of the maize genome

      Wei, F., Stein, J. C., Liang, C., Zhang, J., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D., Currie, J., Lin, J. & 35 others, Kim, H. R., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K. & Wing, R. A., Nov 2009, In: PLoS genetics. 5, 11, e1000728.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      38 Scopus citations
    • Higher-order genome organization in platypus and chicken sperm and repositioning of sex chromosomes during mammalian evolution

      Tsend-Ayush, E., Dodge, N., Mohr, J., Casey, A., Himmelbauer, H., Kremitzki, C. L., Schatzkamer, K., Graves, T., Warren, W. C. & Griützner, F., 2009, In: Chromosoma. 118, 1, p. 53-69 17 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      19 Scopus citations
    • Lineage-specific biology revealed by a finished genome assembly of the mouse

      Church, D. M., Goodstadt, L., Hillier, L. W., Zody, M. C., Goldstein, S., She, X., Bult, C. J., Agarwala, R., Cherry, J. L., DiCuccio, M., Hlavina, W., Kapustin, Y., Meric, P., Maglott, D., Birtle, Z., Marques, A. C., Graves, T., Zhou, S., Teague, B., Potamousis, K. & 155 others, Churas, C., Place, M., Herschleb, J., Runnheim, R., Forrest, D., Amos-Landgraf, J., Schwartz, D. C., Cheng, Z., Lindblad-Toh, K., Eichler, E. E., Ponting, C. P., Muzny, D. M., Dugan-Rocha, S., Ding, Y., Scherer, S. E., Buhay, C. J., Cree, A., Hernandez, J., Holder, M., Hume, J., Jackson, L. R., Kovar, C., Lee, S. L., Lewis, L. R., Metzker, M. L., Narareth, L. V., Sabo, A., Sodergren, E., Gibbs, R. A., FitzGerald, M., Cook, A., Jaffe, D. B., Garber, M., Zimmer, A. R., Pirun, M., Russell, L., Sharpe, T., Chaturvedi, M. K. K., Wilkinson, J., LaButti, K., Yang, X., Bessette, D., Allen, N. R., Nguyen, C., Nguyen, T., Dunbar, C., Lubonja, R., Matthews, C., Liu, X., Benamara, M., Negash, T., Lokyitsang, T., Decktor, K., Piqani, B., Munson, G., Tenzin, P., Stone, S., Macdonald, P., Arachchi, H., Abouelleil, A., Lui, A., Priest, M., Gearin, G., Brown, A., Aftuck, L., Shea, T., Sykes, S., Berlin, A., Chu, J., Dooley, K., Hagopian, D., Hall, J., Hafez, N., Smith, C. L., Olandt, P., Miller, K., Ventkataraman, V., Rachupka, A., Dorris, L., Ayotte, L., Mabbitt, R., Erickson, J., Horn, A., An, P., Naylor, J. W., Settipalli, S., Lander, E. S., Wilson, R. K., Graves, T. A., Fulton, R. S., Rock, S. M., Chinwalla, A. T., Bernard, K., Courtney, L. P., Fronick, C., Fulton, L. L., O'Laughlin, M., Kremitzki, C. L., Minx, P. J., Nelson, J. O., Schatzkamer, K. L., Strong, C., Wollam, A. M., Weinstock, G. M., Yang, S. P., Rogers, J., Grafham, D., Humphray, S., Nicholson, C., Bird, C., Brown, A. J., Burton, J., Clee, C., Hunt, A., Jones, M. C., Lloyd, C., Matthews, L., Mclaren, K., Mclaren, S., McLay, K., Palmer, S. A., Plumb, R., Shownkeen, R., Sims, S., Quail, M. A., Whitehead, S. L., Willey, D. L., Deschamps, S., Kenton, S., Song, L., Do, T., Roe, B., Bouffard, G. G., Blakesley, R. W., Green, E. D., Kucherlapati, R., Grills, G., Li, L., Montgomery, K. T., Kramer, M., Speigel, L., McCombie, W. R., Lucas, S., Terry, A., Gordon, L., Stubbs, L., Denny, P., Brown, S. D. M., Mallon, A. M., Campbell, R. D., Botherby, M. R. M., Jackson, I. J., Rubenfield, M. J., Rogosin, A. M. & Smith, D. R., May 2009, In: PLoS biology. 7, 5, e1000112.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      352 Scopus citations
    • Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

      Girirajan, S., Chen, L., Graves, T., Marques-Bonet, T., Ventura, M., Fronick, C., Fulton, L., Rocchi, M., Fulton, R. S., Wilson, R. K., Mardis, E. R. & Eichler, E. E., Feb 2009, In: Genome research. 19, 2, p. 178-190 13 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      26 Scopus citations
    • The B73 maize genome: Complexity, diversity, and dynamics

      Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M. & 137 others, Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W., Ying, K., Yeh, C. T., Emrich, S. J., Jia, Y., Kalyanaraman, A., Hsia, A. P., Barbazuk, W. B., Baucom, R. S., Brutnell, T. P., Carpita, N. C., Chaparro, C., Chia, J. M., Deragon, J. M., Estill, J. C., Fu, Y., Jeddeloh, J. A., Han, Y., Lee, H., Li, P., Lisch, D. R., Liu, S., Liu, Z., Nagel, D. H., McCann, M. C., Sanmiguel, P., Myers, A. M., Nettleton, D., Nguyen, J., Penning, B. W., Ponnala, L., Schneider, K. L., Schwartz, D. C., Sharma, A., Soderlund, C., Springer, N. M., Sun, Q., Wang, H., Waterman, M., Westerman, R., Wolfgruber, T. K., Yang, L., Yu, Y., Zhang, L., Zhou, S., Zhu, Q., Bennetzen, J. L., Dawe, R. K., Jiang, J., Jiang, N., Presting, G. G., Wessler, S. R., Aluru, S., Martienssen, R. A., Clifton, S. W., McCombie, W. R., Wing, R. A. & Wilson, R. K., Nov 20 2009, In: Science. 326, 5956, p. 1112-1115 4 p.

      Research output: Contribution to journalArticlepeer-review

      2808 Scopus citations
    • The physical and genetic framework of the maize B73 genome

      Wei, F., Zhang, J., Zhou, S., He, R., Schaeffer, M., Collura, K., Kudrna, D., Faga, B. P., Wissotski, M., Golser, W., Rock, S. M., Graves, T. A., Fulton, R. S., Coe, E., Schnable, P. S., Schwartz, D. C., Ware, D., Clifton, S. W., Wilson, R. K. & Wing, R. A., Nov 2009, In: PLoS genetics. 5, 11, e1000715.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      80 Scopus citations
    • 2010

      A human genome structural variation sequencing resource reveals insights into mutational mechanisms

      Kidd, J. M., Graves, T., Newman, T. L., Fulton, R., Hayden, H. S., Malig, M., Kallicki, J., Kaul, R., Wilson, R. K. & Eichler, E. E., Nov 24 2010, In: Cell. 143, 5, p. 837-847 11 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      196 Scopus citations
    • A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk

      Antonacci, F., Kidd, J. M., Marques-Bonet, T., Teague, B., Ventura, M., Girirajan, S., Alkan, C., Campbell, C. D., Vives, L., Malig, M., Rosenfeld, J. A., Ballif, B. C., Shaffer, L. G., Graves, T. A., Wilson, R. K., Schwartz, D. C. & Eichler, E. E., Sep 2010, In: Nature Genetics. 42, 9, p. 745-751 7 p.

      Research output: Contribution to journalArticlepeer-review

      77 Scopus citations
    • Characterization of missing human genome sequences and copy-number polymorphic insertions

      Kidd, J. M., Sampas, N., Antonacci, F., Graves, T., Fulton, R., Hayden, H. S., Alkan, C., Malig, M., Ventura, M., Giannuzzi, G., Kallicki, J., Anderson, P., Tsalenko, A., Yamada, N. A., Tsang, P., Kaul, R., Wilson, R. K., Bruhn, L. & Eichler, E. E., May 2010, In: Nature Methods. 7, 5, p. 365-371 7 p.

      Research output: Contribution to journalArticlepeer-review

      106 Scopus citations
    • Chimpanzee and human y chromosomes are remarkably divergent in structure and gene content

      Hughes, J. F., Skaletsky, H., Pyntikova, T., Graves, T. A., Van Daalen, S. K. M., Minx, P. J., Fulton, R. S., McGrath, S. D., Locke, D. P., Friedman, C., Trask, B. J., Mardis, E. R., Warren, W. C., Repping, S., Rozen, S., Wilson, R. K. & Page, D. C., Jan 28 2010, In: Nature. 463, 7280, p. 536-539 4 p.

      Research output: Contribution to journalArticlepeer-review

      257 Scopus citations
    • Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition

      Bellott, D. W., Skaletsky, H., Pyntikova, T., Mardis, E. R., Graves, T., Kremitzki, C., Brown, L. G., Rozen, S., Warren, W. C., Wilson, R. K. & Page, D. C., Jul 29 2010, In: Nature. 466, 7306, p. 612-616 5 p.

      Research output: Contribution to journalArticlepeer-review

      145 Scopus citations
    • Gene duplication and fragmentation in the zebra finch major histocompatibility complex

      Balakrishnan, C. N., Ekblom, R., Völker, M., Westerdahl, H., Godinez, R., Kotkiewicz, H., Burt, D. W., Graves, T., Griffin, D. K., Warren, W. C. & Edwards, S. V., Apr 1 2010, In: BMC Biology. 8, 29.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      108 Scopus citations
    • The genome of a songbird

      Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backström, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Völker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F. A., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R. & Wilson, R. K., Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      605 Scopus citations
    • The genome of the western clawed frog xenopus tropicalis

      Hellsten, U., Harland, R. M., Gilchrist, M. J., Hendrix, D., Jurka, J., Kapitonov, V., Ovcharenko, I., Putnam, N. H., Shu, S., Taher, L., Blitz, I. L., Blumberg, B., Dichmann, D. S., Dubchak, L., Amaya, E., Detter, J. C., Fletcher, R., Gerhard, D. S., Goodstein, D., Graves, T. & 28 others, Grigoriev, I. V., Grimwood, J., Kawashima, T., Lindquist, E., Lucas, S. M., Mead, P. E., Mitros, T., Ogino, H., Ohta, Y., Poliakov, A. V., Pollet, N., Robert, J., Salamov, A., Sater, A. K., Schmutz, J., Terry, A., Vize, P. D., Warren, W. C., Wells, D., Wills, A., Wilson, R. K., Zimmerman, L. B., Zorn, A. M., Grainger, R., Grammer, T., Khokha, M. K., Richardson, P. M. & Rokhsar, D. S., Apr 30 2010, In: Science. 328, 5978, p. 633-636 4 p.

      Research output: Contribution to journalArticlepeer-review

      551 Scopus citations
    • 2011

      A high-resolution map of human evolutionary constraint using 29 mammals

      Lindblad-Toh, K., Garber, M., Zuk, O., Lin, M. F., Parker, B. J., Washietl, S., Kheradpour, P., Ernst, J., Jordan, G., Mauceli, E., Ward, L. D., Lowe, C. B., Holloway, A. K., Clamp, M., Gnerre, S., Alföldi, J., Beal, K., Chang, J., Clawson, H., Cuff, J. & 66 others, Di Palma, F., Fitzgerald, S., Flicek, P., Guttman, M., Hubisz, M. J., Jaffe, D. B., Jungreis, I., Kent, W. J., Kostka, D., Lara, M., Martins, A. L., Massingham, T., Moltke, I., Raney, B. J., Rasmussen, M. D., Robinson, J., Stark, A., Vilella, A. J., Wen, J., Xie, X., Zody, M. C., Worley, K. C., Kovar, C. L., Muzny, D. M., Gibbs, R. A., Warren, W. C., Mardis, E. R., Weinstock, G. M., Wilson, R. K., Birney, E., Margulies, E. H., Herrero, J., Green, E. D., Haussler, D., Siepel, A., Goldman, N., Pollard, K. S., Pedersen, J. S., Lander, E. S., Kellis, M., Baldwin, J., Bloom, T., Chin, C. W., Heiman, D., Nicol, R., Nusbaum, C., Young, S., Wilkinson, J., Cree, A., Dihn, H. H., Fowler, G., Jhangiani, S., Joshi, V., Lee, S., Lewis, L. R., Nazareth, L. V., Okwuonu, G., Santibanez, J., Delehaunty, K., Dooling, D., Fronik, C., Fulton, L., Fulton, B., Graves, T., Minx, P. & Sodergren, E., Oct 27 2011, In: Nature. 478, 7370, p. 476-482 7 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      719 Scopus citations
    • Comparative and demographic analysis of orang-utan genomes

      Locke, D. P., Hillier, L. W., Warren, W. C., Worley, K. C., Nazareth, L. V., Muzny, D. M., Yang, S. P., Wang, Z., Chinwalla, A. T., Minx, P., Mitreva, M., Cook, L., Delehaunty, K. D., Fronick, C., Schmidt, H., Fulton, L. A., Fulton, R. S., Nelson, J. O., Magrini, V., Pohl, C. & 81 others, Graves, T. A., Markovic, C., Cree, A., Dinh, H. H., Hume, J., Kovar, C. L., Fowler, G. R., Lunter, G., Meader, S., Heger, A., Ponting, C. P., Marques-Bonet, T., Alkan, C., Chen, L., Cheng, Z., Kidd, J. M., Eichler, E. E., White, S., Searle, S., Vilella, A. J., Chen, Y., Flicek, P., Ma, J., Raney, B., Suh, B., Burhans, R., Herrero, J., Haussler, D., Faria, R., Fernando, O., Darré, F., Farré, D., Gazave, E., Oliva, M., Navarro, A., Roberto, R., Capozzi, O., Archidiacono, N., Valle, G. D., Purgato, S., Rocchi, M., Konkel, M. K., Walker, J. A., Ullmer, B., Batzer, M. A., Smit, A. F. A., Hubley, R., Casola, C., Schrider, D. R., Hahn, M. W., Quesada, V., Puente, X. S., Ordõez, G. R., Ĺpez-Otín, C., Vinar, T., Brejova, B., Ratan, A., Harris, R. S., Miller, W., Kosiol, C., Lawson, H. A., Taliwal, V., Martins, A. L., Siepel, A., Roychoudhury, A., Ma, X., Degenhardt, J., Bustamante, C. D., Gutenkunst, R. N., Mailund, T., Dutheil, J. Y., Hobolth, A., Schierup, M. H., Ryder, O. A., Yoshinaga, Y., De Jong, P. J., Weinstock, G. M., Rogers, J., Mardis, E. R., Gibbs, R. A. & Wilson, R. K., Jan 27 2011, In: Nature. 469, 7331, p. 529-533 5 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      364 Scopus citations
    • Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

      Ventura, M., Catacchio, C. R., Alkan, C., Marques-Bonet, T., Sajjadian, S., Graves, T. A., Hormozdiari, F., Navarro, A., Malig, M., Baker, C., Lee, C., Turner, E. H., Chen, L., Kidd, J. M., Archidiacono, N., Shendure, J., Wilson, R. K. & Eichler, E. E., Oct 2011, In: Genome research. 21, 10, p. 1640-1649 10 p.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      53 Scopus citations
    • Modernizing reference genome assemblies

      Church, D. M., Schneider, V. A., Graves, T., Auger, K., Cunningham, F., Bouk, N., Chen, H. C., Agarwala, R., McLaren, W. M., Ritchie, G. R. S., Albracht, D., Kremitzki, M., Rock, S., Kotkiewicz, H., Kremitzki, C., Wollam, A., Trani, L., Fulton, L., Fulton, R., Matthews, L. & 19 others, Whitehead, S., Chow, W., Torrance, J., Dunn, M., Harden, G., Threadgold, G., Wood, J., Collins, J., Heath, P., Griffiths, G., Pelan, S., Grafham, D., Eichler, E. E., Weinstock, G., Mardis, E. R., Wilson, R. K., Howe, K., Flicek, P. & Hubbard, T., Jul 2011, In: PLoS biology. 9, 7, e1001091.

      Research output: Contribution to journalArticlepeer-review

      Open Access
      254 Scopus citations