Tao Ju

Research output

Research output per year 2001 2007 2008 2009 2010 2011 2013 2022

• 78 Article
• 31 Conference contribution
• 10 Paper
• 9 Conference article
• 8 More
  • 4 Editorial
  • 3 Comment/debate
  • 1 Chapter

Research output per year

Research output per year

Search results

• 2022

  Isometric Energies for Recovering Injectivity in Constrained Mapping

  Du, X., Kaufman, D. M., Zhou, Q., Kovalsky, S., Yan, Y., Aigerman, N. & Ju, T., Nov 29 2022, Proceedings - SIGGRAPH Asia 2022 Conference Papers. Spencer, S. N. (ed.). Association for Computing Machinery, Inc, 36. (Proceedings - SIGGRAPH Asia 2022 Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Computer graphics 100%

• MITI minimum information guidelines for highly multiplexed tissue images

  Human Tumor Atlas Network, Mar 2022, In: Nature Methods. 19, 3, p. 262-267 6 p.

  Research output: Contribution to journal › Comment/debate

  Open Access
  8 Scopus citations

• RFEPS: Reconstructing feature-line equipped polygonal surface

  Xu, R., Wang, Z., Dou, Z., Zong, C., Xin, S., Jiang, M., Ju, T. & Tu, C., Nov 30 2022, In: ACM Transactions on Graphics. 41, 6, 228.

  Research output: Contribution to journal › Article › peer-review

  • Computer aided design 100%
  • Geometry 72%
  • Experiments 42%
  1 Scopus citations

• Robust computation of implicit surface networks for piecewise linear functions

  Du, X., Zhou, Q., Carr, N. & Ju, T., Jul 22 2022, In: ACM Transactions on Graphics. 41, 4, 3530176.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Interpolation 100%
  • Set theory 75%

• Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer

  Cui Zhou, D., Jayasinghe, R. G., Chen, S., Herndon, J. M., Iglesia, M. D., Navale, P., Wendl, M. C., Caravan, W., Sato, K., Storrs, E., Mo, C. K., Liu, J., Southard-Smith, A. N., Wu, Y., Naser Al Deen, N., Baer, J. M., Fulton, R. S., Wyczalkowski, M. A., Liu, R., Fronick, C. C., & 46 othersFulton, L. A., Shinkle, A., Thammavong, L., Zhu, H., Sun, H., Wang, L. B., Li, Y., Zuo, C., McMichael, J. F., Davies, S. R., Appelbaum, E. L., Robbins, K. J., Chasnoff, S. E., Yang, X., Reeb, A. N., Oh, C., Serasanambati, M., Lal, P., Varghese, R., Mashl, J. R., Ponce, J., Terekhanova, N. V., Yao, L., Wang, F., Chen, L., Schnaubelt, M., Lu, R. J. H., Schwarz, J. K., Puram, S. V., Kim, A. H., Song, S. K., Shoghi, K. I., Lau, K. S., Ju, T., Chen, K., Chatterjee, D., Hawkins, W. G., Zhang, H., Achilefu, S., Chheda, M. G., Oh, S. T., Gillanders, W. E., Chen, F., DeNardo, D. G., Fields, R. C. & Ding, L., Sep 2022, In: Nature Genetics. 54, 9, p. 1390-1405 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pancreatic Neoplasms 100%
  • Population 41%
  • Neoplasms 34%
  • Proteogenomics 29%
  • Adenocarcinoma 27%
  9 Scopus citations

• Topological Simplification of Nested Shapes

  Zeng, D., Chambers, E., Letscher, D. & Ju, T., Aug 2022, In: Computer Graphics Forum. 41, 5, p. 161-173 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Labeling 100%
  • Labels 87%
  • Topology 69%
• 2021

  Boundary-sampled halfspaces

  Du, X., Zhou, Q., Carr, N. & Ju, T., Jul 1 2021, In: ACM Transactions on Graphics. 40, 4, 3459870.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Geometry 100%
  • Reverse engineering 63%
  7 Scopus citations

• Deforming with Sparsity

  Ju, T., Nov 1 2021, Computer, 54, 11, p. 4-5 2 p.

  Research output: Contribution to specialist publication › Article

  Open Access

  • Computer graphics 100%
  • Visualization 71%

• Optimizing global injectivity for constrained parameterization

  Du, X., Kaufman, D. M., Zhou, Q., Kovalsky, S. Z., Yan, Y., Aigerman, N. & Ju, T., Dec 10 2021, In: ACM Transactions on Graphics. 40, 6, 260.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Parameterization 100%
  3 Scopus citations

• TopoRoot: a method for computing hierarchy and fine-grained traits of maize roots from 3D imaging

  Zeng, D., Li, M., Jiang, N., Ju, Y., Schreiber, H., Chambers, E., Letscher, D., Ju, T. & Topp, C. N., Dec 2021, In: Plant Methods. 17, 1, 127.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Zea mays 100%
  • image analysis 67%
  • corn 50%
  • Crowns 35%
  • root systems 33%
  5 Scopus citations
• 2020

  Comprehensive 3D phenotyping reveals continuous morphological variation across genetically diverse sorghum inflorescences

  Li, M., Shao, M. R., Zeng, D., Ju, T., Kellogg, E. A. & Topp, C. N., Jun 1 2020, In: New Phytologist. 226, 6, p. 1873-1885 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Inflorescence 100%
  • Sorghum 98%
  • Sorghum (Poaceae) 61%
  • inflorescences 53%
  • phenotype 38%
  20 Scopus citations

• Lifting simplices to find injectivity

  Du, X., Aigerman, N., Zhou, Q., Kovalsky, S. Z., Yan, Y., Kaufman, D. M. & Ju, T., Jul 8 2020, In: ACM Transactions on Graphics. 39, 4, 120.

  Research output: Contribution to journal › Article › peer-review
  16 Scopus citations

• Quantifying the polymerization dynamics of plant cortical microtubules using kymograph analysis

  Zhou, R., Liu, H., Ju, T. & Dixit, R., 2020, Plant Cell Biology. Anderson, C. T., Haswell, E. S. & Dixit, R. (eds.). Academic Press Inc., p. 281-293 13 p. (Methods in Cell Biology; vol. 160).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Polymerization 100%
  • Microtubules 94%
  • Microtubule Proteins 53%
  • Cell Shape 22%
  • Growth and Development 19%
  4 Scopus citations

• To cut or to fill: A global optimization approach to topological simplification

  Zeng, D., Chambers, E., Letscher, D. & Ju, T., Nov 26 2020, In: ACM Transactions on Graphics. 39, 6, 201.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Global optimization 100%
  • Topology 65%
  • Labeling 46%
  2 Scopus citations
• 2019

  Special Issue of the 13th International Conference on Geometric Modeling and Processing (GMP 2019)

  Ju, T., Kosinka, J. & Liu, Y., Aug 2019, In: Computer Aided Geometric Design. 73, p. 35-36 2 p.

  Research output: Contribution to journal › Editorial

• Variational implicit point set surfaces

  Huang, Z., Carr, N. & Ju, T., Jul 2019, In: ACM Transactions on Graphics. 38, 4, 124.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Interpolation 100%
  • Sampling 82%
  • Defects 80%
  24 Scopus citations
• 2018

  Repairing inconsistent curve networks on non-parallel cross-sections

  Huang, Z. Y., Holloway, M., Carr, N. & Ju, T., 2018, In: Computer Graphics Forum. 37, 2, p. 25-35 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hard facing 100%
  • Constrained optimization 85%
  • Labels 66%
  2 Scopus citations

• Robust optimization for topological surface reconstruction

  Lazar, R., Dym, N., Kushinsky, Y., Huang, Z., Ju, T. & Lipman, Y., 2018, In: ACM Transactions on Graphics. 37, 4, A7.

  Research output: Contribution to journal › Article › peer-review

  • Surface reconstruction 100%
  • Topology 39%
  • Hard facing 24%
  • Computer graphics 20%
  9 Scopus citations

• Some heuristics for the homological simplification problem

  Chambers, E. W., Ju, T., Letscher, D., Li, M., Topp, C. & Yan, Y., 2018, p. 353-359. 7 p.

  Research output: Contribution to conference › Paper › peer-review

  • Medical Imaging 100%
  • Large Data Sets 91%
  • Imaging 83%
  • Simplification 75%
  • Heuristics 65%
  2 Scopus citations

• Voxel cores: Efficient, robust, and provably good approximation of 3d medial axes

  Yan, Y., Letscher, D. & Ju, T., 2018, In: ACM Transactions on Graphics. 37, 4, A5.

  Research output: Contribution to journal › Article › peer-review

  • Sampling 100%
  • Topology 96%
  30 Scopus citations
• 2017

  Extracting Sharp Features from RGB-D Images

  Cao, Y. P., Ju, T., Xu, J. & Hu, S. M., Dec 2017, In: Computer Graphics Forum. 36, 8, p. 138-152 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Feature extraction 100%
  • Color 93%
  7 Scopus citations

• Feature-aligned segmentation using correlation clustering

  Zhuang, Y., Dou, H., Carr, N. & Ju, T., Jun 1 2017, In: Computational Visual Media. 3, 2, p. 147-160 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Data mining 100%
  • Experiments 42%
  13 Scopus citations

• Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences

  Dou, H., Burrows, D. W., Baker, M. L. & Ju, T., Jun 20 2017, In: Biophysical Journal. 112, 12, p. 2479-2493 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cryoelectron Microscopy 100%
  • Proteins 54%
  11 Scopus citations

• FlowRep: Descriptive curve networks for free-form design shapes

  Gori, G., Sheffer, A., Vining, N., Rosales, E., Carr, N. & Ju, T., 2017, In: ACM Transactions on Graphics. 36, 4, 59.

  Research output: Contribution to journal › Conference article › peer-review

  • Flowlines 100%
  • Geometry 33%
  • Surface reconstruction 24%
  • Computer graphics 20%
  19 Scopus citations

• Topology-controlled reconstruction of multi-labelled domains from cross-sections

  Huang, Z., Zou, M., Carr, N. & Ju, T., 2017, In: ACM Transactions on Graphics. 36, 4, 76.

  Research output: Contribution to journal › Conference article › peer-review

  Open Access

  • Topology 100%
  • Set theory 37%
  • Labels 25%
  • Sampling 20%
  19 Scopus citations
• 2016

  Erosion thickness on medial axes of 3D shapes

  Yan, Y., Sykes, K., Chambers, E., Letscher, D. & Ju, T., Jul 11 2016, In: ACM Transactions on Graphics. 35, 4, a38.

  Research output: Contribution to journal › Conference article › peer-review

  • Erosion 100%
  • Approximation algorithms 27%
  • Topology 17%
  • Experiments 8%
  37 Scopus citations

• Extrinsically smooth direction fields

  Huang, Z. & Ju, T., Aug 1 2016, In: Computers and Graphics. 58, p. 109-117 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Tuning 100%
  • Experiments 45%
  14 Scopus citations

• Fusing Heterogeneous Features From Stacked Sparse Autoencoder for Histopathological Image Analysis

  Zhang, X., Dou, H., Ju, T., Xu, J. & Zhang, S., Sep 2016, In: IEEE Journal of Biomedical and Health Informatics. 20, 5, p. 1377-1383 7 p., 7172448.

  Research output: Contribution to journal › Article › peer-review

  • Image analysis 100%
  • Fusion reactions 83%
  • Image retrieval 53%
  • Electric fuses 53%
  • Breast 53%
  68 Scopus citations

• Template-based surface reconstruction from cross-sections

  Holloway, M., Grimm, C. & Ju, T., Aug 1 2016, In: Computers and Graphics. 58, p. 84-91 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Surface reconstruction 100%
  • Image segmentation 72%
  • Interpolation 65%
  • Set theory 49%
  8 Scopus citations
• 2015

  Burning the medial axis

  Yan, Y., Ju, T., Letscher, D. & Chambers, E., Jul 31 2015, ACM SIGGRAPH 2015 Posters, SIGGRAPH 2015. Association for Computing Machinery, Inc, a62. (ACM SIGGRAPH 2015 Posters, SIGGRAPH 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Geometry 100%
  • Topology 74%
  • Computer graphics 59%
  • Sun 56%
  • Animation 55%
  1 Scopus citations

• Contour guided surface deformation for volumetric segmentation

  Holloway, M., Ju, T. & Grimm, C., Jul 31 2015, ACM SIGGRAPH 2015 Posters, SIGGRAPH 2015. Association for Computing Machinery, Inc, a66. (ACM SIGGRAPH 2015 Posters, SIGGRAPH 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Health risks 100%
  • Computerized tomography 94%
  • Magnetic resonance imaging 80%
  • Bone 74%
  • Planning 48%

• Erratum to: Graph-based deformable matching of 3D line segments with application in protein fitting(Vis Comput, (2015), 31, (967-977), Doi:10.1007/s00371-015-1115-x)

  Dou, H., Baker, M. L. & Ju, T., Nov 1 2015, In: Visual Computer. 31, 11, p. 1567 1 p.

  Research output: Contribution to journal › Comment/debate

  Open Access

• Fusing heterogeneous features for the image-guided diagnosis of intraductal breast lesions

  Zhang, X., Dou, H., Ju, T. & Zhang, S., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 1288-1291 4 p. 7164110. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Fusion reactions 100%
  • Breast 95%
  • Image retrieval 64%
  • Electric fuses 64%
  • Tissue 53%
  6 Scopus citations

• Graph-based deformable matching of 3D line with application in protein fitting

  Dou, H., Baker, M. L. & Ju, T., Jun 12 2015, In: Visual Computer. 31, 6-8, p. 967-977 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Proteins 100%
  • Relaxation 33%
  • Set theory 23%
  5 Scopus citations

• Topology-constrained surface reconstruction from cross-sections

  Zou, M., Holloway, M., Carr, N. & Ju, T., Jul 27 2015, Proceedings of ACM SIGGRAPH 2015. 4 ed. Association for Computing Machinery, Vol. 34. 128

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Surface reconstruction 100%
  • Topology 52%
  • Control surfaces 29%
  • Image analysis 24%
  • Set theory 16%
  34 Scopus citations
• 2014

  An algorithm for suggesting delineation planes for interactive segmentation

  Yifrah, S., Zadicario, E., Ju, T. & Cohen-Or, D., Jul 29 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014. Institute of Electrical and Electronics Engineers Inc., p. 361-364 4 p. 6867883. (2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Uncertainty 100%
  • Art 63%
  • Cluster Analysis 48%
  • Interpolation 45%
  3 Scopus citations

• Anisotropic geodesics for live-wire mesh segmentation

  Zhuang, Y., Zou, M., Carr, N. & Ju, T., Oct 1 2014, In: Computer Graphics Forum. 33, 7, p. 111-120 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Wire 100%
  • Tensors 44%
  • Image segmentation 42%
  19 Scopus citations

• A robust parity test for extracting parallel vectors in 3D

  Ju, T., Cheng, M., Wang, X. & Duan, Y., Dec 31 2014, In: IEEE Transactions on Visualization and Computer Graphics. 20, 12, p. 2526-2534 9 p., 06875965.

  Research output: Contribution to journal › Article › peer-review

  • Data visualization 100%
  • Seed 90%
  • Sampling 61%
  5 Scopus citations

• Computer-assisted shape classification of middle cerebral artery aneurysms for surgical planning

  Burrows, D., Washington, C., Dacey, R. & Ju, T., Jul 29 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014. Institute of Electrical and Electronics Engineers Inc., p. 1311-1315 5 p. 6868118. (2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Intracranial Aneurysm 100%
  • Planning 58%
  • Supervised learning 48%
  • Surgery 46%
  • Aneurysm 27%

• Interactive Image-Guided Modeling of Extruded Shapes

  Cao, Y. P., Ju, T., Fu, Z. & Hu, S. M., Oct 1 2014, In: Computer Graphics Forum. 33, 7, p. 101-110 10 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• Middle cerebral artery bifurcation aneurysms: An anatomic classification scheme for planning optimal surgical strategies

  Washington, C. W., Ju, T., Zipfel, G. J. & Dacey, R. G., 2014, In: Neurosurgery. 10, 1, p. 145-153 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Intracranial Aneurysm 100%
  • Aneurysm 81%
  • Neurosurgery 50%
  • Surgical Instruments 44%
  • Medical Students 22%
  8 Scopus citations

• Preface

  Ju, T. & Bao, H., May 2014, In: Graphical Models. 76, 3, p. 115 1 p.

  Research output: Contribution to journal › Editorial
• 2013

  A general and efficient method for finding cycles in 3D curve networks

  Zhuang, Y., Zou, M., Carr, N. & Ju, T., Nov 2013, In: ACM Transactions on Graphics. 32, 6, 180.

  Research output: Contribution to journal › Article › peer-review

  • Computer graphics 100%
  • Geometry 56%
  23 Scopus citations

• An algorithm for triangulating multiple 3D polygons

  Zou, M., Ju, T. & Carr, N., 2013, In: Eurographics Symposium on Geometry Processing. 32, 5, p. 157-166 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Polygon 100%
  • Triangle 92%
  • Dihedral angle 55%
  • Optimality 45%
  • Output 40%
  15 Scopus citations

• An algorithm for triangulating multiple 3D polygons

  Zou, M., Ju, T. & Carr, N., Jul 3 2013, p. 157-166. 10 p.

  Research output: Contribution to conference › Paper › peer-review

  • Polygon 100%
  • Triangle 92%
  • Dihedral angle 55%
  • Optimality 45%
  • Output 40%
  2 Scopus citations

• Automated, foot-bone registration using subdivision-embedded atlases for spatial mapping of bone mineral density

  Liu, L., Commean, P. K., Hildebolt, C., Sinacore, D., Prior, F., Carson, J. P., Kakadiaris, I. & Ju, T., Jun 2013, In: Journal of Digital Imaging. 26, 3, p. 554-562 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Foot Bones 100%
  • Atlases 70%
  • Minerals 66%
  • Bone 63%
  • Bone Density 59%
  4 Scopus citations

• Cubic mean value coordinates

  Li, X. Y., Ju, T. & Hu, S. M., Jul 2013, In: ACM Transactions on Graphics. 32, 4, 126.

  Research output: Contribution to journal › Article › peer-review

  • Derivatives 100%
  • Polynomials 93%
  11 Scopus citations

• Does the γ dose distribution comparison technique default to the distance to agreement test in clinical dose distributions

  Low, D. A., Morele, D., Chow, P., Dou, T. H. & Ju, T., Jul 2013, In: Medical physics. 40, 7, 071722.

  Research output: Contribution to journal › Article › peer-review

  • Hospital Distribution Systems 100%
  • Prostate 59%
  • Publications 59%
  • Head 51%
  • Lung 38%
  21 Scopus citations

• Feature correspondences using Morse Smale complex

  Feng, W., Huang, J., Ju, T. & Bao, H., Jan 2013, In: Visual Computer. 29, 1, p. 53-67 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Computer graphics 100%
  • Topology 62%
  9 Scopus citations

• Medial residues of piecewise linear manifolds

  Chambers, E. W., Ju, T. & Letscher, D., 2013, p. 19-24. 6 p.

  Research output: Contribution to conference › Paper › peer-review

  • Medial Axis 100%
  • Piecewise Linear 65%
  • Skeleton 49%
  • Homotopy 39%
  • Path Planning 34%
  3 Scopus citations