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Research interests

In the last few years, knowledge about the role of cilia in human biology has grown exponentially. Defects in cilia are connected to developmental defects as well as adult disorders including obesity and diabetes. Using the alga, Chlamydomonas, we have studied the maturation of basal bodies, the gating of proteins into the cilium, genetic interactions of intraflagellar transport proteins, ciliary motility, and signaling through the ciliary membrane proteins using genetics, cell biology and comparative genomics. These studies have lead to better understanding of the role of cilia in polycystic kidney disease and primary ciliary dyskinesia. Recently, we have examined the role of cilia genes in cancer.

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Collaborations and top research areas from the last five years

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  • Whole genome sequence analysis of pulmonary function and COPD in 44,287 multi-ancestry participants

    Kim, W., Hu, X., Kim, K., Chun, S., Orchard, P., Qiao, D., Ruczinski, I., Saferali, A., Aguet, F., Antonacci-Fulton, L., Balte, P. P., Bartz, T. M., Anamika, W. J., Zhou, X., Duan, J. Y., Brody, J. A., Cade, B. E., Daviglus, M. L., Doddapaneni, H. & Dugan-Perez, S. & 37 others, Dutcher, S. K., Frazar, C. D., Gabriel, S. B., Gharib, S. A., Gupta, N., Hobbs, B. D., Kasela, S., Loehr, L. R., Metcalf, G. A., Muzny, D. M., Oelsner, E. C., Rasmussen-Torvik, L. J., Sitlani, C. M., Smith, J., Sofer, T., Xu, H., Yu, B., Zhang, D., Ziniti, J., Barr, R. G., Carson, A. P., Fornage, M., Hou, L., Kalhan, R., Kaplan, R., Lappalainen, T., London, S. J., Morrison, A. C., O’Connor, G. T., Psaty, B. M., Raffield, L. M., Redline, S., Rich, S. S., Rotter, J. I., Silverman, E. K., Manichaikul, A. & Cho, M. H., Dec 2026, In: Genome biology. 27, 1, 28.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies

    NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Li, X., Chen, H., Selvaraj, M. S., Van Buren, E., Zhou, H., Wang, Y., Sun, R., McCaw, Z. R., Yu, Z., Jiang, M. Z., DiCorpo, D., Gaynor, S. M., Dey, R., Arnett, D. K., Benjamin, E. J., Bis, J. C., Blangero, J., Boerwinkle, E. & Bowden, D. W. & 181 others, Brody, J. A., Cade, B. E., Carson, A. P., Carlson, J. C., Chami, N., Chen, Y. D. I., Curran, J. E., de Vries, P. S., Fornage, M., Franceschini, N., Freedman, B. I., Gu, C., Heard-Costa, N. L., He, J., Hou, L., Hung, Y. J., Irvin, M. R., Kaplan, R. C., Kardia, S. L. R., Kelly, T. N., Konigsberg, I., Kooperberg, C., Kral, B. G., Li, C., Li, Y., Lin, H., Liu, C. T., Loos, R. J. F., Mahaney, M. C., Martin, L. W., Mathias, R. A., Mitchell, B. D., Montasser, M. E., Morrison, A. C., Naseri, T., North, K. E., Palmer, N. D., Peyser, P. A., Psaty, B. M., Redline, S., Reiner, A. P., Rich, S. S., Sitlani, C. M., Smith, J. A., Taylor, K. D., Tiwari, H. K., Vasan, R. S., Viali, S., Wang, Z., Wessel, J., Yanek, L. R., Yu, B., de las Fuentes, L., de Andrade, M., Zoellner, S., Zody, M., Ziv, E., Zhu, X., Zhao, W., Zhao, S. X., Zhang, Y., Zekavat, S. M., Yu, K., Yang, I., Xu, H., Wu, J., Wu, B., Wong, Q., Winterkorn, L., Wilson, J., Wilson, C., Williams, S., Williams, L. K., Williams, K., Willer, C., Weng, L. C., Weiss, S. T., Weir, B., Weinstock, J., Weeks, D. E., Watt, J., Watson, K., Wang, J., Wang, H., Wang, F. F., Walts, A., Wallace, R., Walker, T., Vrieze, S., VandeHaar, P., Van Den Berg, D., Vaidya, D., Tsai, M., Tracy, R., Tong, C., Tishkoff, S., Tirschwell, D., Tinker, L., Threlkeld, M., Thornton, T. A., Telen, M., Taylor, S., Taylor, M., Taub, M., Tang, H., Taliun, D., Sériès, F., Szpiro, A., Sylvia, J., Sung, Y. J., Su, J. L., Streeten, E., Storm, G., Stilp, A. M., Sotoodehnia, N., Sofer, T., Snyder, M., Snively, B., Smoller, S., Smith, T., Smith, N., Smith, J., Smith, A. V., Skomro, R., Silverman, E., Silver, B., Shoemaker, M. B., Sheu, W. H. H., Shetty, A., Shetty, A., Sherman, S. L., Sheehan, V., Seidman, J., Seidman, C., Sciurba, F., Schwartz, D., Schwander, K., Santibanez, J., Sankaran, V. G., Sandow, K., Salzberg, S., Salvi, S., Salimi, S., Saleheen, D., Sabino, E. C., Ryan, K., Ruuska, S., Russell, P., Runnels, A., Ruczinski, I., Roselli, C., Dan Roden, R., Robine, N., Robillard, R., Sefuiva Reupena, M., Regan, E., Reeves, C., Reed, R., Ratan, A., Rasmussen-Torvik, L., Rao, D. C., Rajendran, M., Rafaels, N., Qin, Z., Qiao, D., Qasba, P., Preuss, M., Boorgula, M. P., Becker, J. P., Post, W., Pollin, T., Pleiness, J., Phillips, L. S., Peters, U., Perry, J., Perez, M., Peralta, J. M., Parker, C., Papanicolaou, G., Fulton, L. & Dutcher, S. K., Feb 2025, In: Nature Computational Science. 5, 2, p. 125-143 19 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Sequencing in over 50,000 cases identifies coding and structural variation underlying atrial fibrillation risk

    Regeneron Genetics Center, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Choi, S. H., Jurgens, S. J., Xiao, L., Hill, M. C., Haggerty, C. M., Sveinbjörnsson, G., Morrill, V. N., Marston, N. A., Weng, L. C., Pirruccello, J. P., Arnar, D. O., Gudbjartsson, D. F., Mantineo, H., von Falkenhausen, A. S., Natale, A., Tveit, A., Geelhoed, B. & Roselli, C. & 182 others, Van Wagoner, D. R., Darbar, D., Haase, D., Soliman, E. Z., Davogustto, G. E., Jun, G., Calkins, H., Anderson, J. L., Brody, J. A., Halford, J. L., Barnard, J., Hokanson, J. E., Smith, J. D., Bis, J. C., Young, K., Johnson, L. S. B., Risch, L., Gula, L. J., Kwee, L. C., Chaffin, M. D., Kühne, M., Preuss, M., Gupta, N., Nafissi, N. A., Smith, N. L., Nilsson, P. M., van der Harst, P., Wells, Q. S., Judy, R. L., Schnabel, R. B., Johnson, R., Smit, R. A. J., Gabriel, S., Knight, S., Furukawa, T., Blackwell, T. W., Nauffal, V., Wang, X., Min, Y. I., Yoneda, Z. T., Laksman, Z. W. M., Bezzina, C. R., Alonso, A., Psaty, B. M., Albert, C. M., Arking, D. E., Roden, D. M., Chasman, D. I., Rader, D. J., Conen, D., McManus, D. D., Fatkin, D., Benjamin, E. J., Boerwinkle, E., Marcus, G. M., Christophersen, I. E., Smith, J. G., Roberts, J. D., Raffield, L. M., Shoemaker, M. B., Cho, M. H., Cutler, M. J., Rienstra, M., Chung, M. K., S. Olesen, M., Sinner, M. F., Sotoodehnia, N., Kirchhof, P., Loos, R. J. F., Nazarian, S., Mohanty, S., Damrauer, S. M., Kaab, S., Heckbert, S. R., Redline, S., Shah, S. H., Tanaka, T., Ebana, Y., Wolf, S. E., Widom, L., Verweij, N., Ulloa, R. H., Staples, J. C., Siminovitch, K., Shuldiner, A., Schleicher, T. D., Salerno, W., Reid, J. G., Rasool, A., Pradhan, M., Polanco, T., Panea, R., Padilla, M. S., Overton, J. D., Orelus, M., O’Keeffe, S., Nielsen, J., Nafde, M., Mitnaul, L. J., Mighty, J., Maxwell, E. K., Mansfield, A. J., Manoochehri, K., Lotta, L. A., Lopez, A., Li, D., Lattari, M., Lanche, R., Krasheninina, O., Khalid, S., Karalis, K., Jones, M. B., Hawes, A., Habegger, L., Gu, Z., Fuller, E. D., Forsythe, C., Ferreira, M. A. R., Eom, G., Economides, A., Deubler, A., De, T., Coppola, G., Cantor, M., Boutkov, B., Beechert, C., Baras, A., Balasubramanian, S., Bai, X., Abecasis, G., Zoellner, S., Zody, M., Zhu, X., Zhao, W., Zhao, S. X., Zhang, Y., Zekavat, S. M., Yu, K., Yang, I., Yanek, L., Xu, H., Wu, J., Wong, Q., Winterkorn, L., Wilson, J., Wilson, C., Williams, L. K., Williams, K., Willer, C., Wessel, J., Weiss, S. T., Weir, B., Weinstock, J., Weeks, D. E., Watt, J., Watson, K., Wang, J., Wang, H., Wang, F. F., Walts, A., Wallace, R., Walker, T., Vrieze, S., VandeHaar, P., Van Den Berg, D., Vaidya, D., Tsai, M., Tracy, R., Tong, C., Tiwari, H., Tishkoff, S., Tirschwell, D., Tinker, L., Threlkeld, M., Thornton, T. A., Telen, M., Sung, Y. J., Rao, D. C., Gu, C. C., Fulton, L., Dutcher, S. K. & de las Fuentes, L., Mar 2025, In: Nature Genetics. 57, 3, p. 548-562 15 p., e020163.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Undocking of an extensive ciliary network induces proteostasis and cell fate switching resulting in severe primary ciliary dyskinesia

    Brody, S. L., Pan, J., Huang, T., Xu, J., Xu, H., Koenitizer, J. R., Brennan, S. K., Nanjundappa, R., Saba, T. G., Rumman, N., Berical, A., Hawkins, F. J., Wang, X., Zhang, R., Mahjoub, M. R., Horani, A. & Dutcher, S. K., Jan 29 2025, In: Science translational medicine. 17, 783, eadp5173.

    Research output: Contribution to journalArticlepeer-review