• 9239
    Citations
20012024

Research activity per year

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  • Multi-scale signaling and tumor evolution in high-grade gliomas

    Philadelphia Coalition for a Cure & Clinical Proteomic Tumor Analysis Consortium, Jul 8 2024, In: Cancer Cell. 42, 7, p. 1217-1238.e19

    Research output: Contribution to journalArticlepeer-review

    Open Access
    8 Scopus citations
  • Pan-cancer proteogenomics characterization of tumor immunity

    Clinical Proteomic Tumor Analysis Consortium, Petralia, F., Ma, W., Yaron, T. M., Caruso, F. P., Tignor, N., Wang, J. M., Charytonowicz, D., Johnson, J. L., Huntsman, E. M., Marino, G. B., Calinawan, A., Evangelista, J. E., Selvan, M. E., Chowdhury, S., Rykunov, D., Krek, A., Song, X., Turhan, B. & Christianson, K. E. & 125 others, Lewis, D. A., Deng, E. Z., Clarke, D. J. B., Whiteaker, J. R., Kennedy, J. J., Zhao, L., Segura, R. L., Batra, H., Raso, M. G., Parra, E. R., Soundararajan, R., Tang, X., Li, Y., Yi, X., Satpathy, S., Wang, Y., Wiznerowicz, M., González-Robles, T. J., Iavarone, A., Gosline, S. J. C., Reva, B., Robles, A. I., Nesvizhskii, A. I., Mani, D. R., Gillette, M. A., Klein, R. J., Cieslik, M., Zhang, B., Paulovich, A. G., Sebra, R., Gümüş, Z. H., Hostetter, G., Fenyö, D., Omenn, G. S., Cantley, L. C., Ma'ayan, A., Lazar, A. J., Ceccarelli, M., Wang, P., Abelin, J., Aguet, F., Akiyama, Y., An, E., Anand, S., Anurag, M., Babur, Ö., Bavarva, J., Birger, C., Birrer, M. J., Cao, S., Carr, S. A., Chan, D. W., Chinnaiyan, A. M., Cho, H., Clauser, K., Colaprico, A., Zhou, D. C., da Veiga Leprevost, F., Day, C., Dhanasekaran, S. M., Ding, L., Domagalski, M. J., Dou, Y., Druker, B. J., Edwards, N., Ellis, M. J., Foltz, S. M., Francis, A., Geffen, Y., Getz, G., Heiman, D. I., Hong, R., Hu, Y., Huang, C., Jaehnig, E. J., Jewell, S. D., Ji, J., Jiang, W., Katsnelson, L., Ketchum, K. A., Kolodziejczak, I., Krug, K., Kumar-Sinha, C., Lei, J. T., Liang, W. W., Liao, Y., Lindgren, C. M., Liu, T., Liu, W., McDermott, J., McKerrow, W., Mesri, M., Mumphrey, M. B., Newton, C. J., Oldroyd, R., Payne, S. H., Pugliese, P., Rodland, K. D., Rodrigues, F. M., Ruggles, K. V., Savage, S. R., Schadt, E. E., Schnaubelt, M., Schraink, T., Schürer, S., Shi, Z., Smith, R. D., Song, F., Song, Y., Stathias, V., Storrs, E. P., Tan, J., Terekhanova, N. V., Thangudu, R. R., Thiagarajan, M., Wang, L. B., Wen, B., Wu, Y., Wyczalkowski, M. A., Yao, L., Li, Q. K., Zhang, H., Zhang, Q., Zhang, X. & Zhang, Z., Feb 29 2024, In: Cell. 187, 5, p. 1255-1277.e27

    Research output: Contribution to journalArticlepeer-review

    Open Access
    24 Scopus citations
  • Author Correction: Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma (Nature Communications, (2023), 14, 1, (1681), 10.1038/s41467-023-37211-7)

    Wu, Y., Terekhanova, N. V., Caravan, W., Naser Al Deen, N., Lal, P., Chen, S., Mo, C. K., Cao, S., Li, Y., Karpova, A., Liu, R., Zhao, Y., Shinkle, A., Strunilin, I., Weimholt, C., Sato, K., Yao, L., Serasanambati, M., Yang, X. & Wyczalkowski, M. & 22 others, Zhu, H., Zhou, D. C., Jayasinghe, R. G., Mendez, D., Wendl, M. C., Clark, D., Newton, C., Ruan, Y., Reimers, M. A., Pachynski, R. K., Kinsinger, C., Jewell, S., Chan, D. W., Zhang, H., Chaudhuri, A. A., Chheda, M. G., Humphreys, B. D., Mesri, M., Rodriguez, H., Hsieh, J. J., Ding, L. & Chen, F., Dec 2023, In: Nature communications. 14, 1, 2817.

    Research output: Contribution to journalComment/debate

    Open Access
    1 Scopus citations
  • Deep learning integrates histopathology and proteogenomics at a pan-cancer level

    Clinical Proteomic Tumor Analysis Consortium, Wang, J. M., Hong, R., Demicco, E. G., Tan, J., Lazcano, R., Moreira, A. L., Li, Y., Calinawan, A., Razavian, N., Schraink, T., Gillette, M. A., Omenn, G. S., An, E., Rodriguez, H., Tsirigos, A., Ruggles, K. V., Ding, L., Robles, A. I. & Mani, D. R. & 105 others, Rodland, K. D., Lazar, A. J., Liu, W., Fenyö, D., Aguet, F., Akiyama, Y., Anand, S., Anurag, M., Babur, Ö., Bavarva, J., Birger, C., Birrer, M. J., Cantley, L. C., Cao, S., Carr, S. A., Ceccarelli, M., Chan, D. W., Chinnaiyan, A. M., Cho, H., Chowdhury, S., Cieslik, M. P., Clauser, K. R., Colaprico, A., Zhou, D. C., da Veiga Leprevost, F., Day, C., Dhanasekaran, S. M., Domagalski, M. J., Dou, Y., Druker, B. J., Edwards, N., Ellis, M. J., Selvan, M. E., Foltz, S. M., Francis, A., Geffen, Y., Getz, G., Gonzalez Robles, T. J., Gosline, S. J. C., Gümüş, Z. H., Heiman, D. I., Hiltke, T., Hostetter, G., Hu, Y., Huang, C., Huntsman, E., Iavarone, A., Jaehnig, E. J., Jewell, S. D., Ji, J., Jiang, W., Johnson, J. L., Katsnelson, L., Ketchum, K. A., Kolodziejczak, I., Krug, K., Kumar-Sinha, C., Lei, J. T., Liang, W. W., Liao, Y., Lindgren, C. M., Liu, T., Ma, W., Rodrigues, F. M., McKerrow, W., Mesri, M., Nesvizhskii, A. I., Newton, C. J., Oldroyd, R., Paulovich, A. G., Payne, S. H., Petralia, F., Pugliese, P., Reva, B., Rykunov, D., Satpathy, S., Savage, S. R., Schadt, E. E., Schnaubelt, M., Schürer, S., Shi, Z., Smith, R. D., Song, X., Song, Y., Stathias, V., Storrs, E. P., Terekhanova, N. V., Thangudu, R. R., Thiagarajan, M., Tignor, N., Wang, L. B., Wang, P., Wang, Y., Wen, B., Wiznerowicz, M., Wu, Y., Wyczalkowski, M. A., Yao, L., Yaron, T. M., Yi, X., Zhang, B., Zhang, H., Zhang, Q., Zhang, X. & Zhang, Z., Sep 19 2023, In: Cell Reports Medicine. 4, 9, 101173.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    10 Scopus citations
  • Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma

    Wu, Y., Terekhanova, N. V., Caravan, W., Naser Al Deen, N., Lal, P., Chen, S., Mo, C. K., Cao, S., Li, Y., Karpova, A., Liu, R., Zhao, Y., Shinkle, A., Strunilin, I., Weimholt, C., Sato, K., Yao, L., Serasanambati, M., Yang, X. & Wyczalkowski, M. & 22 others, Zhu, H., Zhou, D. C., Jayasinghe, R. G., Mendez, D., Wendl, M. C., Clark, D., Newton, C., Ruan, Y., Reimers, M. A., Pachynski, R. K., Kinsinger, C., Jewell, S., Chan, D. W., Zhang, H., Chaudhuri, A. A., Chheda, M. G., Humphreys, B. D., Mesri, M., Rodriguez, H., Hsieh, J. J., Ding, L. & Chen, F., Dec 2023, In: Nature communications. 14, 1, 1681.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    20 Scopus citations