Personal profile
Research interests
I am interested in how the microbiome, including all of the bacteria, viruses and fungi that live in and on us contribute to health and disease. I have a particular focus on the microbiome in HIV and IBD.
Available to Mentor:
- PhD Students
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Collaborations and top research areas from the last five years
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Associations between the microbiome and immune responses to an adenovirus-based HIV-1 candidate vaccine are distinct between African and US cohorts
Li, Y., Stieh, D. J., Droit, L., Kim, A. H. J., Rodgers, R., Mihindukulasuriya, K. A., Wang, L., Pau, M. G., Yua, O., Virgin, H. W., Barouch, D. H., Baldridge, M. T. & Handley, S. A., Feb 17 2026, In: mSystems. 11, 2Research output: Contribution to journal › Article › peer-review
Open Access -
Gut virome dynamics: from commensal to critical player in health and disease
Chica Cardenas, L. A., Leonard, M. M., Baldridge, M. T. & Handley, S. A., Feb 2026, In: Nature Reviews Gastroenterology and Hepatology. 23, 2, p. 126-144 19 p.Research output: Contribution to journal › Review article › peer-review
Open Access4 Link opens in a new tab Scopus citations -
Single cell viral tagging of Faecalibacterium prausnitzii reveals rare bacteriophages omitted by other techniques
Campbell, D. E., Wu, X., Hall, L. R., Lawrence, D., Molleston, J. M., Schriefer, L. A., Droit, L., Weagley, J. S., Olson, B. S., Rimmer, J., Parkes, M., Handley, S. A. & Baldridge, M. T., Dec 31 2025, In: Gut microbes. 17, 1, 2526719.Research output: Contribution to journal › Article › peer-review
Open Access4 Link opens in a new tab Scopus citations -
Dengue virus surveillance in Nepal yields the first on-site whole genome sequences of isolates from the 2022 outbreak
Napit, R., Elong Ngono, A., Mihindukulasuriya, K. A., Pradhan, A., Khadka, B., Shrestha, S., Droit, L., Paredes, A., Karki, L., Khatiwada, R., Tamang, M., Chalise, B. S., Rawal, M., Jha, B. K., Wang, D., Handley, S. A., Shresta, S. & Manandhar, K. D., Dec 2024, In: BMC genomics. 25, 1, 998.Research output: Contribution to journal › Article › peer-review
Open Access6 Link opens in a new tab Scopus citations -
Draft genomes of 12 Bifidobacterium isolates from human IBD fecal samples
Souza, C. E., Jacobson, N. E., An, M. A., Droit, L., Vega, A. A., Rosales, M., Mihindukulasuriya, K. A., Pastrana, K., Handley, S. A., Parkes, M., Rimmer, J., Wang, D., Dinsdale, E. A., Edwards, R. A. & Segall, A. M., Jan 2024, In: Microbiology Resource Announcements. 13, 1Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations