Research output per year
Research output per year
Personal profile
Research interests
I am interested in how the microbiome, including all of the bacteria, viruses and fungi that live in and on us contribute to health and disease. I have a particular focus on the microbiome in HIV and IBD.
Available to Mentor:
- PhD/MSTP Students
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Dengue virus surveillance in Nepal yields the first on-site whole genome sequences of isolates from the 2022 outbreak
Napit, R., Elong Ngono, A., Mihindukulasuriya, K. A., Pradhan, A., Khadka, B., Shrestha, S., Droit, L., Paredes, A., Karki, L., Khatiwada, R., Tamang, M., Chalise, B. S., Rawal, M., Jha, B. K., Wang, D., Handley, S. A., Shresta, S. & Manandhar, K. D., Dec 2024, In: BMC genomics. 25, 1, 998.Research output: Contribution to journal › Article › peer-review
Open Access -
Draft genomes of 12 Bifidobacterium isolates from human IBD fecal samples
Souza, C. E., Jacobson, N. E., An, M. A., Droit, L., Vega, A. A., Rosales, M., Mihindukulasuriya, K. A., Pastrana, K., Handley, S. A., Parkes, M., Rimmer, J., Wang, D., Dinsdale, E. A., Edwards, R. A. & Segall, A. M., Jan 2024, In: Microbiology Resource Announcements. 13, 1Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Fetal MAVS and type I IFN signaling pathways control ZIKV infection in the placenta and maternal decidua
Alippe, Y., Wang, L., Coskun, R., Muraro, S. P., Zhao, F. R., Elam-Noll, M., White, J. M., Vota, D. M., Hauk, V. C., Gordon, J. I., Handley, S. A. & Diamond, M. S., Sep 2 2024, In: Journal of Experimental Medicine. 221, 9, e20240694.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Genomic surveillance of SARS-CoV-2 in Nepal
Khadka, B., Napit, R., Mihindukulasuriya, K. A., Shrestha, S., Rauniyar, R., Tuladhar, E. T., Droit, L., Paredes, A. M., Jha, R., Raut, R., Jha, B. K., Handley, S. A., Elong-Ngono, A., Shresta, S., Wang, D. & Manandhar, K. D., Dec 2024, In: Microbiology Resource Announcements. 13, 12Research output: Contribution to journal › Article › peer-review
Open Access -
Hecatomb: an integrated software platform for viral metagenomics
Roach, M. J., Beecroft, S. J., Mihindukulasuriya, K. A., Wang, L., Paredes, A., Cárdenas, L. A. C., Henry-Cocks, K., Lima, L. F. O., Dinsdale, E. A., Edwards, R. A. & Handley, S. A., 2024, In: GigaScience. 13, giae020.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations