Richard Vierstra

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Richard Vierstra

Professor of Biology

 https://orcid.org/0000-0003-0210-3516

    Willing to Mentor

    Available to Mentor:

    PhD/MSTP Students

    • 38752
      Citations
    1978 …2024

    Research activity per year

    Search results

    • 2024

      Crystal structure of the photosensory module from a PAS-less cyanobacterial phytochrome as Pr shows a mix of dark-adapted and photoactivated features

      Burgie, E. S., Mickles, A. J., Luo, F., Miller, M. D. & Vierstra, R. D., Jul 2024, In: Journal of Biological Chemistry. 300, 7, 107369.

      Research output: Contribution to journal › Article › peer-review

      Open Access
    • 2023

      Arabidopsis-expressing lysine-null SUMO1 reveals a non-essential role for secondary SUMO modifications in plants

      Rytz, T. C., Feng, J., Barros, J. A. S. & Vierstra, R. D., Jul 2023, In: Plant Direct. 7, 7, e506.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations

    • Autophagy during maize endosperm development dampens oxidative stress and promotes mitochondrial clearance

      Barros, J. A. S., Chatt, E. C., Augustine, R. C., McLoughlin, F., Li, F., Otegui, M. S. & Vierstra, R. D., Oct 2023, In: Plant Physiology. 193, 2, p. 1395-1415 21 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      8 Scopus citations

    • The autophagy receptor NBR1 directs the clearance of photodamaged chloroplasts

      Lee, H. N., Chacko, J. V., Gonzalez Solís, A., Chen, K. E., Barros, J. A. S., Signorelli, S., Millar, A. H., Vierstra, R. D., Eliceiri, K. W. & Otegui, M. S., Apr 18 2023, In: eLife. 12

      Research output: Contribution to journal › Article › peer-review

      Open Access
      12 Scopus citations

    • The structure of Arabidopsis phytochrome A reveals topological and functional diversification among the plant photoreceptor isoforms

      Burgie, E. S., Li, H., Gannam, Z. T. K., McLoughlin, K. E., Vierstra, R. D. & Li, H., Jul 2023, In: Nature Plants. 9, 7, p. 1116-1129 14 p.

      Research output: Contribution to journal › Article › peer-review

      7 Scopus citations
    • 2022

      A trio of ubiquitin ligases sequentially drives ubiquitylation and autophagic degradation of dysfunctional yeast proteasomes

      Marshall, R. S. & Vierstra, R. D., Mar 15 2022, In: Cell Reports. 38, 11, 110535.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      4 Scopus citations

    • Erratum: Autophagic Turnover of Inactive 26S Proteasomes in Yeast Is Directed by the Ubiquitin Receptor Cue5 and the Hsp42 Chaperone (Autophagic Turnover of Inactive 26S Proteasomes in Yeast Is Directed by the Ubiquitin Receptor Cue5 and the Hsp42 Chaperone (2016) 16(6) (1717–1732), (S2211124716309019), (10.1016/j.celrep.2016.07.015))

      Marshall, R. S., McLoughlin, F. & Vierstra, R. D., Mar 15 2022, In: Cell Reports. 38, 11, 110552.

      Research output: Contribution to journal › Comment/debate

      Open Access

    • Erratum: ATG8-Binding UIM Proteins Define a New Class of Autophagy Adaptors and Receptors (Cell (2019) 177(3) (766–781.e24), (S0092867419301588), (10.1016/j.cell.2019.02.009))

      Marshall, R. S., Hua, Z., Mali, S., McLoughlin, F. & Vierstra, R. D., Mar 17 2022, In: Cell. 185, 6, p. 1101-1102 2 p.

      Research output: Contribution to journal › Comment/debate

      Open Access
      6 Scopus citations

    • Erratum: An evolutionarily distinct chaperone promotes 20S proteasome α-ring assembly in plants(J. Cell Sci (2020) 133 (jcs249862) DOI: 10.1242/jcs.249862)

      Marshall, R. S., Gemperline, D., McLoughlin, F., Book, A. J., Hofmann, K. & Vierstra, R. D., Jul 2022, In: Journal of cell science. 135, 14, jcs260414.

      Research output: Contribution to journal › Comment/debate

      Open Access

    • Erratum: An evolutionarily distinct chaperone promotes 20S proteasome α-ring assembly in plants (Journal of Cell Science (2020) 133 (jcs249862) DOI: 10.1242/jcs.249862)

      Marshall, R. S., Gemperline, D., McLoughlin, F., Book, A. J., Hofmann, K. & Vierstra, R. D., Jan 2022, In: Journal of cell science. 135, 2, jcs259736.

      Research output: Contribution to journal › Comment/debate

      Open Access

    • Microautophagy Mediates Vacuolar Delivery of Storage Proteins in Maize Aleurone Cells

      Ding, X., Zhang, X., Paez-Valencia, J., McLoughlin, F., Reyes, F. C., Morohashi, K., Grotewold, E., Vierstra, R. D. & Otegui, M. S., Feb 18 2022, In: Frontiers in Plant Science. 13, 833612.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      18 Scopus citations

    • N1-methylpseudouridine found within COVID-19 mRNA vaccines produces faithful protein products

      Kim, K. Q., Burgute, B. D., Tzeng, S. C., Jing, C., Jungers, C., Zhang, J., Yan, L. L., Vierstra, R. D., Djuranovic, S., Evans, B. S. & Zaher, H. S., Aug 30 2022, In: Cell Reports. 40, 9, 111300.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      27 Scopus citations

    • Plant phytochrome B is an asymmetric dimer with unique signalling potential

      Li, H., Burgie, E. S., Gannam, Z. T. K., Li, H. & Vierstra, R. D., Apr 7 2022, In: Nature. 604, 7904, p. 127-133 7 p.

      Research output: Contribution to journal › Article › peer-review

      39 Scopus citations

    • Retraction: Proteasome storage granules protect proteasomes from autophagic degradation upon carbon starvation

      Vierstra, R. D., Sep 2 2022, In: eLife. 11

      Research output: Contribution to journal › Comment/debate

      Open Access

    • Unbiased proteomic and forward genetic screens reveal that mechanosensitive ion channel MSL10 functions at ER– plasma membrane contact sites in Arabidopsis thaliana

      Codjoe, J. M., Richardson, R. A., McLoughlin, F., Vierstra, R. D. & Haswell, E. S., 2022, In: eLife. 11, e80501.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5 Scopus citations

    • Variation in upstream open reading frames contributes to allelic diversity in maize protein abundance

      Gage, J. L., Mali, S., McLoughlin, F., Khaipho-Burch, M., Monier, B., Bailey-Serres, J., Vierstra, R. D. & Buckler, E. S., Apr 5 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 14, e2112516119.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      19 Scopus citations
    • 2021

      Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families

      Sethe Burgie, E., Gannam, Z. T. K., McLoughlin, K. E., Sherman, C. D., Holehouse, A. S., Stankey, R. J. & Vierstra, R. D., Jun 1 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 22, e2105649118.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      28 Scopus citations

    • Erratum: The ATG1/ATG13 Protein Kinase Complex Is Both a Regulator and a Target of Autophagic Recycling in Arabidopsis(The Plant Cell (2021) 33 (3743-3744) DOI: 10.1105/tpc.111.090993)

      Suttangkakul, A., Li, F., Chung, T. & Vierstra, R. D., Dec 2021, In: Plant Cell. 33, 12, p. 3743-3744 2 p.

      Research output: Contribution to journal › Comment/debate

      Open Access
      1 Scopus citations

    • Erratum: Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis (Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis (2015) 58(6) (1053–1066), (S1097276515003056), (10.1016/j.molcel.2015.04.023))

      Marshall, R. S., Li, F., Gemperline, D. C., Book, A. J. & Vierstra, R. D., May 6 2021, In: Molecular cell. 81, 9, p. 2053 1 p.

      Research output: Contribution to journal › Comment/debate

      Open Access
      3 Scopus citations

    • Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1

      Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., Adamopoulos, I. E., Adeli, K., Adolph, T. E., Adornetto, A., Aflaki, E., Agam, G., Agarwal, A., Aggarwal, B. B., Agnello, M. & Agostinis, P. & 2,909 others, Agrewala, J. N., Agrotis, A., Aguilar, P. V., Ahmad, S. T., Ahmed, Z. M., Ahumada-Castro, U., Aits, S., Aizawa, S., Akkoc, Y., Akoumianaki, T., Akpinar, H. A., Al-Abd, A. M., Al-Akra, L., Al-Gharaibeh, A., Alaoui-Jamali, M. A., Alberti, S., Alcocer-Gómez, E., Alessandri, C., Ali, M., Alim Al-Bari, M. A., Aliwaini, S., Alizadeh, J., Almacellas, E., Almasan, A., Alonso, A., Alonso, G. D., Altan-Bonnet, N., Altieri, D. C., Álvarez, É. M. C., Alves, S., Alves da Costa, C., Alzaharna, M. M., Amadio, M., Amantini, C., Amaral, C., Ambrosio, S., Amer, A. O., Ammanathan, V., An, Z., Andersen, S. U., Andrabi, S. A., Andrade-Silva, M., Andres, A. M., Angelini, S., Ann, D., Anozie, U. C., Ansari, M. Y., Antas, P., Antebi, A., Antón, Z., Anwar, T., Apetoh, L., Apostolova, N., Araki, T., Araki, Y., Arasaki, K., Araújo, W. L., Araya, J., Arden, C., Arévalo, M. A., Arguelles, S., Arias, E., Arikkath, J., Arimoto, H., Ariosa, A. R., Armstrong-James, D., Arnauné-Pelloquin, L., Aroca, A., Arroyo, D. S., Arsov, I., Artero, R., Asaro, D. M. L., Aschner, M., Ashrafizadeh, M., Ashur-Fabian, O., Atanasov, A. G., Au, A. K., Auberger, P., Auner, H. W., Aurelian, L., Autelli, R., Avagliano, L., Ávalos, Y., Aveic, S., Aveleira, C. A., Avin-Wittenberg, T., Aydin, Y., Ayton, S., Ayyadevara, S., Azzopardi, M., Baba, M., Backer, J. M., Backues, S. K., Bae, D. H., Bae, O. N., Bae, S. H., Baehrecke, E. H., Baek, A., Baek, S. H., Baek, S. H., Bagetta, G., Bagniewska-Zadworna, A., Bai, H., Bai, J., Bai, X., Bai, Y., Bairagi, N., Baksi, S., Balbi, T., Baldari, C. T., Balduini, W., Ballabio, A., Ballester, M., Balazadeh, S., Balzan, R., Bandopadhyay, R., Banerjee, S., Banerjee, S., Bánréti, Á., Bao, Y., Baptista, M. S., Baracca, A., Barbati, C., Bargiela, A., Barilà, D., Barlow, P. G., Barmada, S. J., Barreiro, E., Barreto, G. E., Bartek, J., Bartel, B., Bartolome, A., Barve, G. R., Basagoudanavar, S. H., Bassham, D. C., Bast, R. C., Basu, A., Batoko, H., Batten, I., Baulieu, E. E., Baumgarner, B. L., Bayry, J., Beale, R., Beau, I., Beaumatin, F., Bechara, L. R. G., Beck, G. R., Beers, M. F., Begun, J., Behrends, C., Behrens, G. M. N., Bei, R., Bejarano, E., Bel, S., Behl, C., Belaid, A., Belgareh-Touzé, N., Bellarosa, C., Belleudi, F., Belló Pérez, M., Bello-Morales, R., Beltran, J. S. D. O., Beltran, S., Benbrook, D. M., Bendorius, M., Benitez, B. A., Benito-Cuesta, I., Bensalem, J., Berchtold, M. W., Berezowska, S., Bergamaschi, D., Bergami, M., Bergmann, A., Berliocchi, L., Berlioz-Torrent, C., Bernard, A., Berthoux, L., Besirli, C. G., Besteiro, S., Betin, V. M., Beyaert, R., Bezbradica, J. S., Bhaskar, K., Bhatia-Kissova, I., Bhattacharya, R., Bhattacharya, S., Bhattacharyya, S., Bhuiyan, M. S., Bhutia, S. K., Bi, L., Bi, X., Biden, T. J., Bijian, K., Billes, V. A., Binart, N., Bincoletto, C., Birgisdottir, A. B., Bjorkoy, G., Blanco, G., Blas-Garcia, A., Blasiak, J., Blomgran, R., Blomgren, K., Blum, J. S., Boada-Romero, E., Boban, M., Boesze-Battaglia, K., Boeuf, P., Boland, B., Bomont, P., Bonaldo, P., Bonam, S. R., Bonfili, L., Bonifacino, J. S., Boone, B. A., Bootman, M. D., Bordi, M., Borner, C., Bornhauser, B. C., Borthakur, G., Bosch, J., Bose, S., Botana, L. M., Botas, J., Boulanger, C. M., Boulton, M. E., Bourdenx, M., Bourgeois, B., Bourke, N. M., Bousquet, G., Boya, P., Bozhkov, P. V., Bozi, L. H. M., Bozkurt, T. O., Brackney, D. E., Brandts, C. H., Braun, R. J., Braus, G. H., Bravo-Sagua, R., Bravo-San Pedro, J. M., Brest, P., Bringer, M. A., Briones-Herrera, A., Broaddus, V. C., Brodersen, P., Brodsky, J. L., Brody, S. L., Bronson, P. G., Bronstein, J. M., Brown, C. N., Brown, R. E., Brum, P. C., Brumell, J. H., Brunetti-Pierri, N., Bruno, D., Bryson-Richardson, R. J., Bucci, C., Buchrieser, C., Bueno, M., Buitrago-Molina, L. E., Buraschi, S., Buch, S., Buchan, J. R., Buckingham, E. M., Budak, H., Budini, M., Bultynck, G., Burada, F., Burgoyne, J. R., Burón, M. I., Bustos, V., Büttner, S., Butturini, E., Byrd, A., Cabas, I., Cabrera-Benitez, S., Cadwell, K., Cai, J., Cai, L., Cai, Q., Cairó, M., Calbet, J. A., Caldwell, G. A., Caldwell, K. A., Call, J. A., Calvani, R., Calvo, A. C., Calvo-Rubio Barrera, M., Camara, N. O. S., Camonis, J. H., Camougrand, N., Campanella, M., Campbell, E. M., Campbell-Valois, F. X., Campello, S., Campesi, I., Campos, J. C., Camuzard, O., Cancino, J., Candido de Almeida, D., Canesi, L., Caniggia, I., Canonico, B., Cantí, C., Cao, B., Caraglia, M., Caramés, B., Carchman, E. H., Cardenal-Muñoz, E., Cardenas, C., Cardenas, L., Cardoso, S. M., Carew, J. S., Carle, G. F., Carleton, G., Carloni, S., Carmona-Gutierrez, D., Carneiro, L. A., Carnevali, O., Carosi, J. M., Carra, S., Carrier, A., Carrier, L., Carroll, B., Carter, A. B., Carvalho, A. N., Casanova, M., Casas, C., Casas, J., Cassioli, C., Castillo, E. F., Castillo, K., Castillo-Lluva, S., Castoldi, F., Castori, M., Castro, A. F., Castro-Caldas, M., Castro-Hernandez, J., Castro-Obregon, S., Catz, S. D., Cavadas, C., Cavaliere, F., Cavallini, G., Cavinato, M., Cayuela, M. L., Cebollada Rica, P., Cecarini, V., Cecconi, F., Cechowska-Pasko, M., Cenci, S., Ceperuelo-Mallafré, V., Cerqueira, J. J., Cerutti, J. M., Cervia, D., Cetintas, V. B., Cetrullo, S., Chae, H. J., Chagin, A. S., Chai, C. Y., Chakrabarti, G., Chakrabarti, O., Chakraborty, T., Chakraborty, T., Chami, M., Chamilos, G., Chan, D. W., Chan, E. Y. W., Chan, E. D., Chan, H. Y. E., Chan, H. H., Chan, H., Chan, M. T. V., Chan, Y. S., Chandra, P. K., Chang, C. P., Chang, C., Chang, H. C., Chang, K., Chao, J., Chapman, T., Charlet-Berguerand, N., Chatterjee, S., Chaube, S. K., Chaudhary, A., Chauhan, S., Chaum, E., Checler, F., Cheetham, M. E., Chen, C. S., Chen, G. C., Chen, J. F., Chen, L. L., Chen, L., Chen, L., Chen, M., Chen, M. K., Chen, N., Chen, Q., Chen, R. H., Chen, S., Chen, W., Chen, W., Chen, X. M., Chen, X. W., Chen, X., Chen, Y., Chen, Y. G., Chen, Y., Chen, Y., Chen, Y. J., Chen, Y. Q., Chen, Z. S., Chen, Z., Chen, Z. H., Chen, Z. J., Chen, Z., Cheng, H., Cheng, J., Cheng, S. Y., Cheng, W., Cheng, X., Cheng, X. T., Cheng, Y., Cheng, Z., Chen, Z., Cheong, H., Cheong, J. K., Chernyak, B. V., Cherry, S., Cheung, C. F. R., Cheung, C. H. A., Cheung, K. H., Chevet, E., Chi, R. J., Chiang, A. K. S., Chiaradonna, F., Chiarelli, R., Chiariello, M., Chica, N., Chiocca, S., Chiong, M., Chiou, S. H., Chiramel, A. I., Chiurchiù, V., Cho, D. H., Choe, S. K., Choi, A. M. K., Choi, M. E., Choudhury, K. R., Chow, N. S., Chu, C. T., Chua, J. P., Chua, J. J. E., Chung, H., Chung, K. P., Chung, S., Chung, S. H., Chung, Y. L., Cianfanelli, V., Ciechomska, I. A., Cifuentes, M., Cinque, L., Cirak, S., Cirone, M., Clague, M. J., Clarke, R., Clementi, E., Coccia, E. M., Codogno, P., Cohen, E., Cohen, M. M., Colasanti, T., Colasuonno, F., Colbert, R. A., Colell, A., Čolić, M., Coll, N. S., Collins, M. O., Colombo, M. I., Colón-Ramos, D. A., Combaret, L., Comincini, S., Cominetti, M. R., Consiglio, A., Conte, A., Conti, F., Contu, V. R., Cookson, M. R., Coombs, K. M., Coppens, I., Corasaniti, M. T., Corkery, D. P., Cordes, N., Cortese, K., Costa, M. D. C., Costantino, S., Costelli, P., Coto-Montes, A., Crack, P. J., Crespo, J. L., Criollo, A., Crippa, V., Cristofani, R., Csizmadia, T., Cuadrado, A., Cui, B., Cui, J., Cui, Y., Cui, Y., Culetto, E., Cumino, A. C., Cybulsky, A. V., Czaja, M. J., Czuczwar, S. J., D’Adamo, S., D’Amelio, M., D’Arcangelo, D., D’Lugos, A. C., D’Orazi, G., da Silva, J. A., Dafsari, H. S., Dagda, R. K., Dagdas, Y., Daglia, M., Dai, X., Dai, Y., Dai, Y., Dal Col, J., Dalhaimer, P., Dalla Valle, L., Dallenga, T., Dalmasso, G., Damme, M., Dando, I., Dantuma, N. P., Darling, A. L., Das, H., Dasarathy, S., Dasari, S. K., Dash, S., Daumke, O., Dauphinee, A. N., Davies, J. S., Dávila, V. A., Davis, R. J., Davis, T., Dayalan Naidu, S., De Amicis, F., De Bosscher, K., De Felice, F., De Franceschi, L., De Leonibus, C., de Mattos Barbosa, M. G., De Meyer, G. R. Y., De Milito, A., De Nunzio, C., De Palma, C., De Santi, M., De Virgilio, C., De Zio, D., Debnath, J., DeBosch, B. J., Decuypere, J. P., Deehan, M. A., Deflorian, G., DeGregori, J., Dehay, B., Del Rio, G., Delaney, J. R., Delbridge, L. M. D., Delorme-Axford, E., Delpino, M. V., Demarchi, F., Dembitz, V., Demers, N. D., Deng, H., Deng, Z., Dengjel, J., Dent, P., Denton, D., DePamphilis, M. L., Der, C. J., Deretic, V., Descoteaux, A., Devis, L., Devkota, S., Devuyst, O., Dewson, G., Dharmasivam, M., Dhiman, R., di Bernardo, D., Di Cristina, M., Di Domenico, F., Di Fazio, P., Di Fonzo, A., Di Guardo, G., Di Guglielmo, G. M., Di Leo, L., Di Malta, C., Di Nardo, A., Di Rienzo, M., Di Sano, F., Diallinas, G., Diao, J., Diaz-Araya, G., Díaz-Laviada, I., Dickinson, J. M., Diederich, M., Dieudé, M., Dikic, I., Ding, S., Ding, W. X., Dini, L., Dinić, J., Dinic, M., Dinkova-Kostova, A. T., Dionne, M. S., Distler, J. H. W., Diwan, A., Dixon, I. M. C., Djavaheri-Mergny, M., Dobrinski, I., Dobrovinskaya, O., Dobrowolski, R., Dobson, R. C. J., Đokić, J., Dokmeci Emre, S., Donadelli, M., Dong, B., Dong, X., Dong, Z., Dorn, G. W., Dotsch, V., Dou, H., Dou, J., Dowaidar, M., Dridi, S., Drucker, L., Du, A., Du, C., Du, G., Du, H. N., Du, L. L., du Toit, A., Duan, S. B., Duan, X., Duarte, S. P., Dubrovska, A., Dunlop, E. A., Dupont, N., Durán, R. V., Dwarakanath, B. S., Dyshlovoy, S. A., Ebrahimi-Fakhari, D., Eckhart, L., Edelstein, C. L., Efferth, T., Eftekharpour, E., Eichinger, L., Eid, N., Eisenberg, T., Eissa, N. T., Eissa, S., Ejarque, M., El Andaloussi, A., El-Hage, N., El-Naggar, S., Eleuteri, A. M., El-Shafey, E. S., Elgendy, M., Eliopoulos, A. G., Elizalde, M. M., Elks, P. M., Elsasser, H. P., Elsherbiny, E. S., Emerling, B. M., Emre, N. C. T., Eng, C. H., Engedal, N., Engelbrecht, A. M., Engelsen, A. S. T., Enserink, J. M., Escalante, R., Esclatine, A., Escobar-Henriques, M., Eskelinen, E. L., Espert, L., Eusebio, M. O., Fabrias, G., Fabrizi, C., Facchiano, A., Facchiano, F., Fadeel, B., Fader, C., Faesen, A. C., Fairlie, W. D., Falcó, A., Falkenburger, B. H., Fan, D., Fan, J., Fan, Y., Fang, E. F., Fang, Y., Fang, Y., Fanto, M., Farfel-Becker, T., Faure, M., Fazeli, G., Fedele, A. O., Feldman, A. M., Feng, D., Feng, J., Feng, L., Feng, Y., Feng, Y., Feng, W., Fenz Araujo, T., Ferguson, T. A., Fernández, Á. F., Fernandez-Checa, J. C., Fernández-Veledo, S., Fernie, A. R., Ferrante, A. W., Ferraresi, A., Ferrari, M. F., Ferreira, J. C. B., Ferro-Novick, S., Figueras, A., Filadi, R., Filigheddu, N., Filippi-Chiela, E., Filomeni, G., Fimia, G. M., Fineschi, V., Finetti, F., Finkbeiner, S., Fisher, E. A., Fisher, P. B., Flamigni, F., Fliesler, S. J., Flo, T. H., Florance, I., Florey, O., Florio, T., Fodor, E., Follo, C., Fon, E. A., Forlino, A., Fornai, F., Fortini, P., Fracassi, A., Fraldi, A., Franco, B., Franco, R., Franconi, F., Frankel, L. B., Friedman, S. L., Fröhlich, L. F., Frühbeck, G., Fuentes, J. M., Fujiki, Y., Fujita, N., Fujiwara, Y., Fukuda, M., Fulda, S., Furic, L., Furuya, N., Fusco, C., Gack, M. U., Gaffke, L., Galadari, S., Galasso, A., Galindo, M. F., Gallolu Kankanamalage, S., Galluzzi, L., Galy, V., Gammoh, N., Gan, B., Ganley, I. G., Gao, F., Gao, H., Gao, M., Gao, P., Gao, S. J., Gao, W., Gao, X., Garcera, A., Garcia, M. N., Garcia, V. 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      Research output: Contribution to journal › Review article › peer-review

      Open Access
      1587 Scopus citations

    • Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production

      Harkess, A., McLoughlin, F., Bilkey, N., Elliott, K., Emenecker, R., Mattoon, E., Miller, K., Czymmek, K., Vierstra, R. D., Meyers, B. C. & Michael, T. P., Mar 29 2021, In: Journal of Experimental Botany. 72, 7, p. 2491-2500 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      17 Scopus citations

    • Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90.1 and ROF1

      Thirumalaikumar, V. P., Gorka, M., Schulz, K., Masclaux-Daubresse, C., Sampathkumar, A., Skirycz, A., Vierstra, R. D. & Balazadeh, S., 2021, In: Autophagy. 17, 9, p. 2184-2199 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      76 Scopus citations

    • The SUMO ligase MMS21 profoundly influences maize development through its impact on genome activity and stability

      Zhang, J., Augustine, R. C., Suzuki, M., Feng, J., Char, S. N., Yang, B., McCarty, D. R. & Vierstra, R. D., Oct 25 2021, In: PLoS genetics. 17, 10, e1009830.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      14 Scopus citations

    • Ubiquitylome analysis reveals a central role for the ubiquitin-proteasome system in plant innate immunity

      Ma, X., Zhang, C., Kim, D. Y., Huang, Y., Chatt, E., He, P., Vierstra, R. D. & Shan, L., Apr 2021, In: Plant Physiology. 185, 4, p. 1943-1965 23 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      34 Scopus citations
    • 2020

      An evolutionarily distinct chaperone promotes 20S proteasome α-ring assembly in plants

      Marshall, R. S., Gemperline, D. C., McLoughlin, F., Book, A. J., Hofmann, K. & Vierstra, R. D., Nov 2020, In: Journal of cell science. 133, 21, jcs249862.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • Arabidopsis cargo receptor NBR1 mediates selective autophagy of defective proteins

      Jung, H., Lee, H. N., Marshall, R. S., Lomax, A. W., Yoon, M. J., Kim, J., Kim, J. H., Vierstra, R. D. & Chung, T., Jan 1 2020, In: Journal of Experimental Botany. 71, 1, p. 73-89 17 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      70 Scopus citations

    • Autophagy plays prominent roles in amino acid, nucleotide, and carbohydrate metabolism during fixed-carbon starvation in maize

      McLoughlin, F., Marshall, R. S., Ding, X., Chatt, E. C., Kirkpatrick, L. D., Augustine, R. C., Li, F., Otegui, M. S. & Vierstra, R. D., Sep 2020, In: Plant Cell. 32, 9, p. 2699-2724 26 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      57 Scopus citations

    • AUTOPHAGY-RELATED14 and its associated phosphatidylinositol 3-kinase complex promote autophagy in arabidopsis

      Liu, F., Hu, W., Li, F., Marshall, R. S., Zarza, X., Munnik, T. & Vierstra, R. D., Dec 2020, In: Plant Cell. 32, 12, p. 3939-3960 22 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      45 Scopus citations

    • Corrigendum: The Vacuolar Protein Sorting-38 Subunit of the Arabidopsis Phosphatidylinositol-3-Kinase Complex Plays Critical Roles in Autophagy, Endosome Sorting, and Gravitropism (Frontiers in Plant Science, (2018), 9, 10.3389/fpls.2018.00781)

      Liu, F., Hu, W. & Vierstra, R. D., Feb 28 2020, In: Frontiers in Plant Science. 11, 261.

      Research output: Contribution to journal › Comment/debate

      Open Access

    • Editorial: Intracellular Proteasome Dynamics

      Enenkel, C., Marshall, R. S. & Vierstra, R. D., Jul 17 2020, In: Frontiers in Molecular Biosciences. 7, 143.

      Research output: Contribution to journal › Editorial

      Open Access

    • Photoreversible interconversion of a phytochrome photosensory module in the crystalline state

      Sethe Burgie, E., Clinger, J. A., Miller, M. D., Brewster, A. S., Aller, P., Butryn, A., Fuller, F. D., Gul, S., Young, I. D., Pham, C. C., Kim, I. S., Bhowmick, A., O’Riordan, L. J., Sutherlin, K. D., Heinemann, J. V., Batyuk, A., Alonso-Mori, R., Hunter, M. S., Koglin, J. E. & Yano, J. & 7 others, Yachandra, V. K., Sauter, N. K., Cohen, A. E., Kern, J., Orville, A. M., Phillips, G. N. & Vierstra, R. D., Jan 7 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 1, p. 300-307 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      21 Scopus citations

    • Reticulon proteins modulate autophagy of the endoplasmic reticulum in maize endosperm

      Zhang, X., Ding, X., Marshall, R. S., Paez-Valencia, J., Lacey, P., Vierstra, R. D. & Otegui, M. S., Feb 2020, In: eLife. 9, e51918.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      71 Scopus citations
    • 2019

      ATG8-Binding UIM Proteins Define a New Class of Autophagy Adaptors and Receptors

      Marshall, R. S., Hua, Z., Mali, S., McLoughlin, F. & Vierstra, R. D., Apr 18 2019, In: Cell. 177, 3, p. 766-781.e24

      Research output: Contribution to journal › Article › peer-review

      Open Access
      210 Scopus citations

    • Dynamic regulation of the 26S proteasome: From synthesis to degradation

      Marshall, R. S. & Vierstra, R. D., 2019, In: Frontiers in Molecular Biosciences. 6, JUN, 40.

      Research output: Contribution to journal › Review article › peer-review

      Open Access
      155 Scopus citations

    • Genetic analyses of the arabidopsis ATG1 kinase complex reveal both kinase-dependent and independent autophagic routes during fixed-carbon starvation

      Huang, X., Zheng, C., Liu, F., Yang, C., Zheng, P., Lu, X., Tian, J., Chung, T., Otegui, M. S., Xiao, S., Gao, C., Vierstr, R. D. & Li, F., 2019, In: Plant Cell. 31, 12, p. 2973-2995 23 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      93 Scopus citations

    • HSP101 interacts with the proteasome and promotes the clearance of ubiquitylated protein aggregates

      McLoughlin, F., Kim, M., Marshall, R. S., Vierstra, R. D. & Vierling, E., Aug 2019, In: Plant Physiology. 180, 4, p. 1829-1847 19 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      78 Scopus citations

    • Oxidation and alkylation stresses activate ribosome-quality control

      Yan, L. L., Simms, C. L., McLoughlin, F., Vierstra, R. D. & Zaher, H. S., Dec 1 2019, In: Nature communications. 10, 1, 5611.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      63 Scopus citations

    • PCH1 regulates light, temperature, and circadian signaling as a structural component of phytochrome B-photobodies in Arabidopsis

      Huang, H., McLoughlin, K. E., Sorkin, M. L., Sethe Burgie, E., Bindbeutel, R. K., Vierstra, R. D. & Nusinow, D. A., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8603-8608 6 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      51 Scopus citations

    • Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in Arabidopsis

      Gemperline, D. C., Marshall, R. S., Lee, K. H., Zhao, Q., Hu, W., McLoughlin, F., Scalf, M., Smith, L. M. & Vierstra, R. D., Nov 15 2019, In: Journal of Biological Chemistry. 294, 46, p. 17570-17592 23 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations

    • Ubiquitin carboxyl-terminal hydrolases are required for period maintenance of the circadian clock at high temperature in Arabidopsis

      Hayama, R., Yang, P., Valverde, F., Mizoguchi, T., Furutani-Hayama, I., Vierstra, R. D. & Coupland, G., Dec 1 2019, In: Scientific reports. 9, 1, 17030.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      24 Scopus citations
    • 2018

      Autophagy: The Master of Bulk and Selective Recycling

      Marshall, R. S. & Vierstra, R. D., Apr 29 2018, In: Annual Review of Plant Biology. 69, p. 173-208 36 p.

      Research output: Contribution to journal › Review article › peer-review

      Open Access
      371 Scopus citations

    • Bacteria exploit autophagy for proteasome degradation and enhanced virulence in plants

      Üstün, S., Hafrén, A., Liu, Q., Marshall, R. S., Minina, E. A., Bozhkov, P. V., Vierstra, R. D. & Hofius, D., Mar 2018, In: Plant Cell. 30, 3, p. 668-685 18 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      93 Scopus citations

    • Kelch f-box protein positively influences arabidopsis seed germination by targeting phytochrome-interacting factor1

      Majee, M., Kumar, S., Kathare, P. K., Wu, S., Gingerich, D., Nayak, N. R., Salaita, L., Dinkins, R., Martin, K., Goodin, M., Dirk, L. M. A., Lloyd, T. D., Zhu, L., Chappell, J., Hunt, A. G., Vierstra, R., Huq, E. & Bruce Downie, A., Apr 24 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. E4120-E4129

      Research output: Contribution to journal › Article › peer-review

      Open Access
      58 Scopus citations

    • Maize multi-omics reveal roles for autophagic recycling in proteome remodelling and lipid turnover

      McLoughlin, F., Augustine, R. C., Marshall, R. S., Li, F., Kirkpatrick, L. D., Otegui, M. S. & Vierstra, R. D., Dec 1 2018, In: Nature Plants. 4, 12, p. 1056-1070 15 p.

      Research output: Contribution to journal › Article › peer-review

      110 Scopus citations

    • Proteasome storage granules protect proteasomes from autophagic degradation upon carbon starvation

      Marshall, R. S. & Vierstra, R. D., Apr 6 2018, In: eLife. 7, e34532.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      73 Scopus citations

    • Revised nomenclature and functional overview of the ULP gene family of plant deSUMOylating proteases

      Castro, P. H., Bachmair, A., Bejarano, E. R., Coupland, G., Maria Lois, L., Sadanandom, A., Van Den Burg, H. A., Vierstra, R. D. & Azevedo, H., Aug 31 2018, In: Journal of Experimental Botany. 69, 19, p. 4505-4509 5 p.

      Research output: Contribution to journal › Review article › peer-review

      Open Access
      20 Scopus citations

    • SUMOylation: re-wiring the plant nucleus during stress and development

      Augustine, R. C. & Vierstra, R. D., Oct 2018, In: Current Opinion in Plant Biology. 45, p. 143-154 12 p.

      Research output: Contribution to journal › Review article › peer-review

      Open Access
      115 Scopus citations

    • SUMOylome profiling reveals a diverse array of nuclear targets modified by the SUMO ligase SIZ1 during heat stress

      Rytz, T. C., Miller, M. J., McLoughlin, F., Augustine, R. C., Marshall, R. S., Juan, Y. T., Charng, Y. Y., Scalf, M., Smith, L. M. & Vierstra, R. D., May 2018, In: Plant Cell. 30, 5, p. 1077-1099 23 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      120 Scopus citations

    • The vacuolar protein sorting-38 subunit of the arabidopsis phosphatidylinositol-3-kinase complex plays critical roles in autophagy, endosome sorting, and gravitropism

      Liu, F., Hu, W. & Vierstra, R. D., Jun 18 2018, In: Frontiers in Plant Science. 9, 781.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      29 Scopus citations

    • To save or degrade: balancing proteasome homeostasis to maximize cell survival

      Marshall, R. S. & Vierstra, R. D., Nov 2 2018, In: Autophagy. 14, 11, p. 2029-2031 3 p.

      Research output: Contribution to journal › Comment/debate

      Open Access
      13 Scopus citations