Research output per year
Research output per year
- 50 - 100 out of 180 results
Search results
-
2021
A retrospective look at the predictions and recommendations from the 2009 AMIA policy meeting: did we see EHR-related clinician burnout coming?
Starren, J. B., Tierney, W. M., Williams, M. S., Tang, P., Weir, C., Koppel, R., Payne, P., Hripcsak, G. & Detmer, D. E., May 1 2021, In: Journal of the American Medical Informatics Association. 28, 5, p. 948-954 7 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Clinical research informatics
Payne, P. R. O., Embi, P. J. & Cimino, J. J., Jul 2 2021, Biomedical Informatics: Computer Applications in Health Care and Biomedicine: Fifth Edition. Springer International Publishing, p. 913-940 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Comparison of early warning scores for sepsis early identification and prediction in the general ward setting
Yu, S. C., Shivakumar, N., Betthauser, K., Gupta, A., Lai, A. M., Kollef, M. H., Payne, P. R. O. & Michelson, A. P., Jul 1 2021, In: JAMIA Open. 4, 3, ooab062.Research output: Contribution to journal › Review article › peer-review
Open Access12 Scopus citations -
Comparison of Sepsis Definitions as Automated Criteria
Yu, S. C., Betthauser, K. D., Gupta, A., Lyons, P. G., Lai, A. M., Kollef, M. H., Payne, P. R. O. & Michelson, A. P., Apr 1 2021, In: Critical care medicine. 49, 4, p. E433-E443Research output: Contribution to journal › Article › peer-review
17 Scopus citations -
Computational analysis to repurpose drugs for COVID-19 based on transcriptional response of host cells to SARS-CoV-2
Li, F., Michelson, A. P., Foraker, R., Zhan, M. & Payne, P. R. O., Dec 2021, In: BMC Medical Informatics and Decision Making. 21, 1, 15.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Conceptual considerations for using EHR-based activity logs to measure clinician burnout and its effects
Kannampallil, T., Abraham, J., Lou, S. S. & Payne, P. R. O., May 1 2021, In: Journal of the American Medical Informatics Association. 28, 5, p. 1032-1037 6 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
Machine learning for modeling the progression of Alzheimer disease dementia using clinical data: A systematic literature review
Kumar, S., Oh, I., Schindler, S., Lai, A., Payne, P. R. O. & Gupta, A., Jul 1 2021, In: JAMIA Open. 4, 3, ooab052.Research output: Contribution to journal › Review article › peer-review
Open Access43 Scopus citations -
Pattern recognition in lymphoid malignancies using CytoGPS and Mercator
Abrams, Z. B., Tally, D. G., Zhang, L., Coombes, C. E., Payne, P. R. O., Abruzzo, L. V. & Coombes, K. R., Dec 2021, In: BMC bioinformatics. 22, 1, 100.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Predictive Modeling for Clinical Features Associated With Neurofibromatosis Type 1
Morris, S., Gupta, A., Kim, S., Foraker, R. E., Gutmann, D. & Payne, P. R. O., Dec 1 2021, In: Neurology: Clinical Practice. 11, 6, p. E497-E505Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Synergistic drug combination prediction by integrating multiomics data in deep learning models
Zhang, T., Zhang, L., Payne, P. R. O. & Li, F., 2021, Methods in Molecular Biology. Humana Press Inc., p. 223-238 16 p. (Methods in Molecular Biology; vol. 2194).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access86 Scopus citations -
Ten principles for data sharing and commercialization
Cole, C. L., Sengupta, S., Rossetti, S., Vawdrey, D. K., Halaas, M., Maddox, T. M., Gordon, G., Dave, T., Payne, P. R. O., Williams, A. E. & Estrin, D., Mar 1 2021, In: Journal of the American Medical Informatics Association. 28, 3, p. 646-649 4 p.Research output: Contribution to journal › Review article › peer-review
Open Access14 Scopus citations -
The national COVID cohort collaborative: Analyses of original and computationally derived electronic health record data
Foraker, R., Guo, A., Thomas, J., Zamstein, N., Payne, P. R. O. & Wilcox, A., Oct 2021, In: Journal of medical Internet research. 23, 10, e30697.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment
Haendel, M. A., Chute, C. G., Bennett, T. D., Eichmann, D. A., Guinney, J., Kibbe, W. A., Payne, P. R. O., Pfaff, E. R., Robinson, P. N., Saltz, J. H., Spratt, H., Suver, C., Wilbanks, J., Wilcox, A. B., Williams, A. E., Wu, C., Blacketer, C., Bradford, R. L., Cimino, J. J. & Clark, M. & 36 others, , Mar 1 2021, In: Journal of the American Medical Informatics Association. 28, 3, p. 427-443 17 p.Research output: Contribution to journal › Article › peer-review
Open Access306 Scopus citations -
Transmission dynamics: Data sharing in the COVID-19 era
Foraker, R. E., Lai, A. M., Kannampallil, T. G., Woeltje, K. F., Trolard, A. M. & Payne, P. R. O., Jan 2021, In: Learning Health Systems. 5, 1, e10235.Research output: Contribution to journal › Comment/debate
Open Access25 Scopus citations -
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: A perspective from 15 academic medical centers
Madhavan, S., Bastarache, L., Brown, J. S., Butte, A. J., Dorr, D. A., Embi, P. J., Friedman, C. P., Johnson, K. B., Moore, J. H., Kohane, I. S., Payne, P. R. O., Tenenbaum, J. D., Weiner, M. G., Wilcox, A. B. & Ohno-Machado, L., Feb 1 2021, In: Journal of the American Medical Informatics Association. 28, 2, p. 393-401 9 p.Research output: Contribution to journal › Review article › peer-review
Open Access49 Scopus citations -
2020
Cognitive plausibility in voice-based AI health counselors
Kannampallil, T., Smyth, J. M., Jones, S., Payne, P. R. O. & Ma, J., Dec 1 2020, In: npj Digital Medicine. 3, 1, 72.Research output: Contribution to journal › Comment/debate
Open Access10 Scopus citations -
CytoGPS: A large-scale karyotype analysis of CML data
Abrams, Z. B., Li, S., Zhang, L., Coombes, C. E., Payne, P. R. O., Heerema, N. A., Abruzzo, L. V. & Coombes, K. R., Oct 2020, In: Cancer Genetics. 248-249, p. 34-38 5 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Language matters: Precision health as a cross-cutting care, research and policy agenda
Payne, P. R. O. & Detmer, D. E., Apr 1 2020, In: Journal of the American Medical Informatics Association. 27, 4, p. 658-661 4 p.Research output: Contribution to journal › Review article › peer-review
8 Scopus citations -
Mining reported adverse events induced by potential opioid-drug interactions
Chen, J., Wu, G., Michelson, A., Vesoulis, Z., Bogner, J., Corrigan, J. D., Payne, P. R. O. & Li, F., 2020, In: JAMIA Open. 3, 1, p. 104-112 9 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Predicting Tumor Cell Response to Synergistic Drug Combinations Using a Novel Simplified Deep Learning Model
Zhang, H., Feng, J., Zeng, A., Payne, P. & Li, F., 2020, In: AMIA ... Annual Symposium proceedings. AMIA Symposium. 2020, p. 1364-1372 9 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
Spot the difference: Comparing results of analyses from real patient data and synthetic derivatives
Foraker, R. E., Yu, S. C., Gupta, A., Michelson, A. P., Pineda Soto, J. A., Colvin, R., Loh, F., Kollef, M. H., Maddox, T., Evanoff, B., Dror, H., Zamstein, N., Lai, A. M. & Payne, P. R. O., Dec 1 2020, In: JAMIA Open. 3, 4, p. 557-566 10 p.Research output: Contribution to journal › Article › peer-review
Open Access42 Scopus citations -
Transcriptomics-based drug repurposing approach identifies novel drugs against sorafenib-resistant hepatocellular carcinoma
Regan-Fendt, K., Li, D., Reyes, R., Yu, L., Wani, N. A., Hu, P., Jacob, S. T., Ghoshal, K., Payne, P. R. O. & Motiwala, T., Oct 2020, In: Cancers. 12, 10, p. 1-22 22 p., 2730.Research output: Contribution to journal › Article › peer-review
Open Access28 Scopus citations -
Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department
Ahmad, F. A., Payne, P. R. O., Lackey, I., Komeshak, R., Kenney, K., Magnusen, B., Metts, C. & Bailey, T., Feb 1 2020, In: Journal of the American Medical Informatics Association. 27, 2, p. 265-273 9 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
When past is not a prologue: Adapting informatics practice during a pandemic
Kannampallil, T. G., Foraker, R. E., Lai, A. M., Woeltje, K. F. & Payne, P. R. O., Jul 1 2020, In: Journal of the American Medical Informatics Association. 27, 7, p. 1142-1146 5 p.Research output: Contribution to journal › Review article › peer-review
Open Access13 Scopus citations -
2019
A protocol to evaluate RNA sequencing normalization methods
Abrams, Z. B., Johnson, T. S., Huang, K., Payne, P. R. O. & Coombes, K., Dec 20 2019, In: BMC bioinformatics. 20, 679.Research output: Contribution to journal › Article › peer-review
Open Access70 Scopus citations -
CytoGPS: A web-enabled karyotype analysis tool for cytogenetics
Abrams, Z. B., Zhang, L., Abruzzo, L. V., Heerema, N. A., Li, S., Dillon, T., Rodriguez, R., Coombes, K. R. & Payne, P. R. O., Dec 15 2019, In: Bioinformatics. 35, 24, p. 5365-5366 2 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Foundations for Studying Clinical Workflow: Development of a Composite Inter-Observer Reliability Assessment for Workflow Time Studies
Lopetegui, M., Yen, P. Y., Embi, P. & Payne, P., 2019, In: AMIA ... Annual Symposium proceedings. AMIA Symposium. 2019, p. 617-626 10 p.Research output: Contribution to journal › Article › peer-review
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Open Science and the Future of Data Analytics
Klenk, J., Payne, P. R. O., Shrestha, R. & Edmunds, M., Jan 1 2019, Consumer Informatics and Digital Health: Solutions for Health and Health Care. Springer International Publishing, p. 337-357 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
4 Scopus citations -
Questions for Artificial Intelligence in Health Care
Maddox, T. M., Rumsfeld, J. S. & Payne, P. R. O., Jan 1 2019, In: JAMA - Journal of the American Medical Association. 321, 1, p. 31-32 2 p.Research output: Contribution to journal › Comment/debate
192 Scopus citations -
Synergy from gene expression and network mining (SynGeNet) method predicts synergistic drug combinations for diverse melanoma genomic subtypes
Regan-Fendt, K. E., Xu, J., DiVincenzo, M., Duggan, M. C., Shakya, R., Na, R., Carson, W. E., Payne, P. R. O. & Li, F., Dec 1 2019, In: npj Systems Biology and Applications. 5, 1, 6.Research output: Contribution to journal › Article › peer-review
Open Access38 Scopus citations -
The 'full stack' of healthcare innovation skills: Combining clinical informatics with care delivery innovation
Maddox, T. M. & Payne, P. R., Jan 1 2019, In: Personalized Medicine. 16, 1, p. 9-14 6 p.Research output: Contribution to journal › Comment/debate
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2018
Are Synthetic Data Derivatives the Future of Translational Medicine?
Foraker, R., Mann, D. L. & Payne, P. R. O., Oct 2018, In: JACC: Basic to Translational Science. 3, 5, p. 716-718 3 p.Research output: Contribution to journal › Editorial
Open Access17 Scopus citations -
Biomedical informatics meets data science: Current state and future directions for interaction
Payne, P. R. O., Bernstam, E. V. & Starren, J. B., 2018, In: JAMIA Open. 1, 2, p. 136-141 6 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Democratizing health data for translational research
Payne, P. R. O., Shah, N. H., Tenenbaum, J. D. & Mangravite, L., 2018, In: Pacific Symposium on Biocomputing. 0, 212669, p. 240-246 7 p.Research output: Contribution to journal › Conference article › peer-review
2 Scopus citations -
Diffusion mapping of drug targets on disease signaling network elements reveals drug combination strategies
Xu, J., Regan-Fendt, K., Deng, S., Carson, W. E., Payne, P. R. O. & Li, F., 2018, In: Pacific Symposium on Biocomputing. 0, 212669, p. 92-103 12 p.Research output: Contribution to journal › Conference article › peer-review
8 Scopus citations -
The diversity and disparity in biomedical informatics (DDBI) workshop
Southerland, W. M., Swamidass, S. J., Payne, P. R. O., Wiley, L. & Williams-Devane, C., 2018, In: Pacific Symposium on Biocomputing. 0, 212669, p. 614-617 4 p.Research output: Contribution to journal › Conference article › peer-review
Open Access3 Scopus citations -
2017
Classification of Indeterminate Melanocytic Lesions by MicroRNA Profiling
Latchana, N., del Campo, S. E. M., Grignol, V. P., Clark, J. R., Albert, S. P., Zhang, J., Wei, L., Aldrink, J. H., Nicol, K. K., Ranalli, M. A., Peters, S. B., Gru, A., Trihka, P., Payne, P. R. O., Howard, J. H. & Carson, W. E., Feb 1 2017, In: Annals of Surgical Oncology. 24, 2, p. 347-354 8 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Enabling open science for health research: collaborative informatics environment for learning on health outcomes (CIELO)
Payne, P., Lele, O., Johnson, B. & Holve, E., Jul 2017, In: Journal of medical Internet research. 19, 7, e276.Research output: Contribution to journal › Review article › peer-review
Open Access12 Scopus citations -
From Data to Knowledge: An Introduction to Biomedical Informatics
Payne, P. R. O., 2017, Genomic and Precision Medicine: Foundations, Translation, and Implementation: Third Edition. Elsevier Inc., p. 89-104 16 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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MD-Miner: A network-based approach for personalized drug repositioning
Wu, H., Miller, E., Wijegunawardana, D., Regan, K., Payne, P. R. O. & Li, F., Oct 3 2017, In: BMC Systems Biology. 11, 86.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
Open data for discovery science
Payne, P. R. O., Huang, K. U. N., Shah, N. H. & Tenenbaum, J., Jan 1 2017, In: Pacific Symposium on Biocomputing. 0, 212679, p. 649-652 4 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Plasma microrna levels following resection of metastatic melanoma
Latchana, N., Abrams, Z. B., Harrison Howard, J., Regan, K., Jacob, N., Fadda, P., Terando, A., Markowitz, J., Agnese, D., Payne, P. & Carson, W. E., Feb 23 2017, In: Bioinformatics and Biology Insights. 11, 1177932217694837.Research output: Contribution to journal › Article › peer-review
Open Access25 Scopus citations -
2016
Discovery of molecularly targeted therapies
Regan, K., Abrams, Z., Sharpnack, M., Srivastava, A., Huang, K., Shah, N. & Payne, P. R. O., 2016, In: Pacific Symposium on Biocomputing. p. 1-8 8 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Discovery of molecularly targeted therapies
Regan, K., Abrams, Z., Sharpnack, M., Srivastava, A., Huang, K., Shah, N. & Payne, P., Jan 1 2016, In: Pacific Symposium on Biocomputing. p. 1-8 8 p.Research output: Contribution to journal › Conference article › peer-review
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Drug repurposing hypothesis generation using the "RE:fine drugs" system
Regan, K., Moosavinasab, S., Payne, P. & Lin, S., Dec 11 2016, In: Journal of Visualized Experiments. 2016, 118, e54948.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Electronic health record-based assessment of cardiovascular health: The stroke prevention in healthcare delivery environments (SPHERE) study
Foraker, R. E., Shoben, A. B., Kelley, M. M., Lai, A. M., Lopetegui, M. A., Jackson, R. D., Langan, M. A. & Payne, P. R. O., Dec 1 2016, In: Preventive Medicine Reports. 4, p. 303-308 6 p.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
Global microRNA profiling for diagnostic appraisal of melanocytic Spitz tumors
Latchana, N., Regan, K., Howard, J. H., Aldrink, J. H., Ranalli, M. A., Peters, S. B., Zhang, X., Gru, A., Payne, P. R. O., Suarez-Kelly, L. P. & Carson, W. E., Oct 1 2016, In: Journal of Surgical Research. 205, 2, p. 350-358 9 p.Research output: Contribution to journal › Article › peer-review
Open Access19 Scopus citations -
MicroRNA profiling of patient plasma for clinical trials using bioinformatics and biostatistical approaches
Markowitz, J., Abrams, Z., Jacob, N. K., Zhang, X., Hassani, J. N., Latchana, N., Wei, L., Regan, K. E., Brooks, T. R., Uppati, S. R., Levine, K. M., Bekaii-Saab, T., Kendra, K. L., Lesinski, G. B., Howard, J. H., Olencki, T., Payne, P. R. & Carson, W. E., Sep 29 2016, In: OncoTargets and Therapy. 9, p. 5931-5941 11 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
'RE:fine drugs': an interactive dashboard to access drug repurposing opportunities
Moosavinasab, S., Patterson, J., Strouse, R., Rastegar-Mojarad, M., Regan, K., Payne, P. R. O., Huang, Y. & Lin, S. M., 2016, In: Database : the journal of biological databases and curation. 2016Research output: Contribution to journal › Article › peer-review
Open Access49 Scopus citations -
Rethinking the role and impact of health information technology: Informatics as an interventional discipline
Payne, P. R. O., Lussier, Y., Foraker, R. E. & Embi, P. J., 2016, In: BMC Medical Informatics and Decision Making. 16, 1, 40.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations