Philip Payne

2025

Comparative Effectiveness of Baricitinib Versus Tocilizumab in Hospitalized Patients With COVID-19: A Retrospective Cohort Study of the National Covid Collaborative

National COVID Cohort Collaborative (N3C) Consortium, Jan 1 2025, In: Critical care medicine. 53, 1, p. e29-e41

Research output: Contribution to journal › Article › peer-review

Developing approaches to incorporate donor-lung computed tomography images into machine learning models to predict severe primary graft dysfunction after lung transplantation

Ma, W., Oh, I., Luo, Y., Kumar, S., Gupta, A., Lai, A., Puri, V., Kreisel, D., Gelman, A. E., Nava, R., Witt, C., Byers, D. E., Halverson, L., Vazquez-Guillamet, R., Payne, P., Sotiras, A., Lu, H., Niazi, K., Gurcan, M. N. & Hachem, R. & 1 others, Michelson, A. P., 2025, (Accepted/In press) In: American Journal of Transplantation.

Research output: Contribution to journal › Article › peer-review

Open Access

Evaluating dimensionality reduction of comorbidities for predictive modeling in individuals with neurofibromatosis type 1

Gupta, A., Hillis, E., Oh, I. Y., Morris, S. M., Abrams, Z., Foraker, R. E., Gutmann, D. H. & Payne, P. R. O., Feb 1 2025, In: JAMIA Open. 8, 1, ooae157.

Research output: Contribution to journal › Article › peer-review

Open Access

Long-Term Mortality Following SARS-CoV-2 Infection in Rural Versus Urban Dwellers With Autoimmune or Inflammatory Rheumatic Disease: A Retrospective Cohort Analysis From the National COVID Cohort Collaborative

the National COVID Cohort Collaborative Consortium, Jan 2025, In: Arthritis Care and Research. 77, 1, p. 143-155 13 p.

Research output: Contribution to journal › Article › peer-review

M3NetFlow: A multi-scale multi-hop graph AI model for integrative multi-omic data analysis

Zhang, H., Goedegebuure, S. P., Ding, L., DeNardo, D., Fields, R., Province, M., Chen, Y., Payne, P. & Li, F., Mar 21 2025, In: iScience. 28, 3, 111920.

Research output: Contribution to journal › Article › peer-review

Open Access

Multi-modal prediction of extracorporeal support-a resource intensive therapy, utilizing a large national database

Zhu, D., Xue, B., Shah, N., Payne, P., Lu, C. & Said, A., Feb 1 2025, In: JAMIA Open. 8, 1, ooae158.

Research output: Contribution to journal › Article › peer-review

Open Access

The Recent Increase in Invasive Bacterial Infections A Report From the National COVID Cohort Collaborative

The N3C Consortium, Mar 1 2025, In: Pediatric Infectious Disease Journal. 44, 3, p. 217-227 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Toward an artificial intelligence code of conduct for health and healthcare: implications for the biomedical informatics community

Payne, P., Johnson, K. B., Maddox, T. M., Embi, P. J., Mandl, K. D., McGraw, D., Saria, S. & Adams, L., Feb 1 2025, In: Journal of the American Medical Informatics Association. 32, 2, p. 408-412 5 p.

Research output: Contribution to journal › Article › peer-review

2024

A Case Demonstration of the Open Health Natural Language Processing Toolkit From the National COVID-19 Cohort Collaborative and the Researching COVID to Enhance Recovery Programs for a Natural Language Processing System for COVID-19 or Postacute Sequelae of SARS CoV-2 Infection: Algorithm Development and Validation

National COVID Cohort Collaborative, 2024, In: JMIR Medical Informatics. 12, e49997.

Research output: Contribution to journal › Article › peer-review

Open Access

Associations of County-Level Social Determinants of Health with COVID-19 Related Hospitalization Among People with HIV: A Retrospective Analysis of the U.S. National COVID Cohort Collaborative (N3C)

The N3C Consortium, Oct 2024, In: AIDS and Behavior. 28, Suppl 1, p. 136-148 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Characterizing the impact of SARS-CoV-2 reinfection on surgical outcomes

The National COVID Cohort Collaborative (N3C) Consortium, Li, C. X. R., Shaik, T., Canales, B., Yang, X., Szabo, A., Lauer, K., Gould, J., Kothari, A. N., Verhagen, N. B., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A. J., Manna, A., Saha, A., Olex, A., Zhou, A., Williams, A. E. & Southerland, A. & 118 others, Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Brown, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Hayanga, J. A., Pincavitch, J., Clark, J., Harper, J. R., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Saltz, J., Loomba, J., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., Jan 1 2024, In: British Journal of Surgery. 111, 1, znad436.

Research output: Contribution to journal › Article › peer-review

Open Access

Chronic Lung Disease as a Risk Factor for Long COVID in Patients Diagnosed With Coronavirus Disease 2019: A Retrospective Cohort Study

the National COVID Cohort (N3C) Collaborative, Aug 1 2024, In: Open Forum Infectious Diseases. 11, 8, ofae424.

Research output: Contribution to journal › Article › peer-review

Open Access

Clinical variants paired with phenotype: A rich resource for brain gene curation

Brain Gene Registry Consortium, Chopra, M., Savatt, J. M., Bingaman, T. I., Good, M. E., Morgan, A., Cooney, C., Rossel, A. M., VanHoute, B., Cordova, I., Mahida, S., Lanzotti, V., Baldridge, D., Gurnett, C. A., Piven, J., Hazlett, H., Pomeroy, S. L., Sahin, M., Payne, P. R. O. & Riggs, E. R. & 23 others, Constantino, J. N., Gropman, A., Smith-Hicks, C. L., Neul, J., Agosto, J. A. M., German, K., Izumi, K., Abbeduto, L., Dawalt, L., Wangler, M., Wasserstein, M., Storch, E. A., Cohen, J. S., Samaco, R., Molholm, S., Shankar, S., Srivastava, S., Walkley, S., Sveden, A., Dies, K., Gupta, A., Oh, I. & Hauck, R., Mar 2024, In: Genetics in Medicine. 26, 3, 101035.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

Comparative effectiveness of dexamethasone in treatment of hospitalized COVID-19 patients in the United States during the first year of the pandemic: Findings from the National COVID Cohort Collaborative (N3C) data repository

Zhou, R., Johnson, K. E., Rousseau, J. F., Rathouz, P. J., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A., Zhou, A., Williams, A. E., Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B. & Hendricks, B. & 112 others, Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Brown, D., Boudreau, E., Hill, E., Zampino, E., Carlson Marti, E., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Hayanga, J. W. A., Pincavitch, J., Clark, J., Harper, J. R., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Saltz, J., Loomba, J., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Tanner Zhang, X., Mar 2024, In: PloS one. 19, 3 March, e0294892.

Research output: Contribution to journal › Article › peer-review

Open Access

COVID-19 outcomes in persons with hemophilia: results from a US-based national COVID-19 surveillance registry

National COVID Cohort Collaborative Consortium, Sharathkumar, A., Wendt, L., Ortman, C., Srinivasan, R., Chute, C. G., Chrischilles, E., Takemoto, C. M., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A., Zhou, A., Williams, A. E., Southerland, A., Girvin, A. T. & Walden, A. & 116 others, Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Brown, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Hayanga, J. W. A., Pincavitch, J., Clark, J., Harper, J. R., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Saltz, J., Loomba, J., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., Jan 2024, In: Journal of Thrombosis and Haemostasis. 22, 1, p. 61-75 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Crowd-sourced machine learning prediction of long COVID using data from the National COVID Cohort Collaborative

Long COVID Computational Challenge Participants & N3C Consortium, Oct 2024, In: EBioMedicine. 108, 105333.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence

McMurry, A. J., Gottlieb, D. I., Miller, T. A., Jones, J. R., Atreja, A., Crago, J., Desai, P. M., Dixon, B. E., Garber, M., Ignatov, V., Kirchner, L. A., Payne, P. R. O., Saldanha, A. J., Shankar, P. R. V., Solad, Y. V., Sprouse, E. A., Terry, M., Wilcox, A. B. & Mandl, K. D., Aug 1 2024, In: Journal of the American Medical Informatics Association. 31, 8, p. 1638-1647 10 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Developing machine learning models to predict primary graft dysfunction after lung transplantation

Michelson, A. P., Oh, I., Gupta, A., Puri, V., Kreisel, D., Gelman, A. E., Nava, R., Witt, C. A., Byers, D. E., Halverson, L., Vazquez-Guillamet, R., Payne, P. R. O. & Hachem, R. R., Mar 2024, In: American Journal of Transplantation. 24, 3, p. 458-467 10 p.

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

Examining heterogeneity in dementia using data-driven unsupervised clustering of cognitive profiles

Kumar, S., Oh, I. Y., Schindler, S., Ghoshal, N., Abrams, Z. & Payne, P., Nov 2024, In: PloS one. 19, 11 November, e0313425.

Research output: Contribution to journal › Article › peer-review

Open Access

From Alpha to Omicron and Beyond: Associations Between SARS-CoV-2 Variants and Surgical Outcomes

N3C Consortium, Sep 2024, In: Journal of Surgical Research. 301, p. 71-79 9 p.

Research output: Contribution to journal › Article › peer-review

HiMAL: Multimodal Hierarchical Multi-task Auxiliary Learning framework for predicting Alzheimer's disease progression

Kumar, S., Yu, S. C., Michelson, A., Kannampallil, T. & Payne, P., Oct 1 2024, In: JAMIA Open. 7, 3, ooae087.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Impact of Nutritional Status on COVID-19-Induced Olfactory Dysfunction

The N3C Consortium, Oct 2024, In: Laryngoscope. 134, 10, p. 4338-4343 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Improving Normative Modeling for Multi-Modal Neuroimaging Data Using Mixture-of-Product-of-Experts Variational Autoencoders

Kumar, S., Payne, P. & Sotiras, A., 2024, IEEE International Symposium on Biomedical Imaging, ISBI 2024 - Conference Proceedings. IEEE Computer Society, (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

1 Scopus citations

Leveraging GPT-4 for identifying cancer phenotypes in electronic health records: A performance comparison between GPT-4, GPT-3.5-turbo, Flan-T5, Llama-3-8B, and spaCy's rule-based and machine learning-based methods

Bhattarai, K., Oh, I. Y., Sierra, J. M., Tang, J., Payne, P. R. O., Abrams, Z. & Lai, A. M., Oct 1 2024, In: JAMIA Open. 7, 3, ooae060.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Meeting the Artificial Intelligence Needs of U.S. Health Systems

Lyons, P. G., Dorr, D. A., Melton, G. B., Singh, K. & Payne, P. R. O., Oct 2024, In: Annals of internal medicine. 177, 10, p. 1428-1430 3 p.

Research output: Contribution to journal › Comment/debate

mosGraphGen: a novel tool to generate multi-omics signaling graphs to facilitate integrative and interpretable graph AI model development

Zhang, H., Cao, D., Chen, Z., Zhang, X., Chen, Y., Sessions, C., Cruchaga, C., Payne, P., Li, G., Province, M. & Li, F., 2024, In: Bioinformatics Advances. 4, 1, vbae151.

Research output: Contribution to journal › Article › peer-review

Open Access

PathFinder: a novel graph transformer model to infer multi-cell intra- and inter-cellular signaling pathways and communications

Feng, J., Song, H., Province, M., Li, G., Payne, P. R. O., Chen, Y. & Li, F., 2024, In: Frontiers in Cellular Neuroscience. 18, 1369242.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Predicting Long COVID in the National COVID Cohort Collaborative Using Super Learner: Cohort Study

The National COVID Cohort Collaborative (N3C) Consortium, 2024, In: JMIR Public Health and Surveillance. 10, e53322.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Real world performance of the 21st Century Cures Act population-level application programming interface

SMART Cumulus Network, Jones, J. R., Gottlieb, D., McMurry, A. J., Atreja, A., Desai, P. M., Dixon, B. E., Payne, P. R. O., Saldanha, A. J., Shankar, P., Solad, Y., Wilcox, A. B., Ali, M. S., Kang, E., Martin, A. M., Sprouse, E., Taylor, D. E., Terry, M., Ignatov, V. & Mandl, K. D., May 1 2024, In: Journal of the American Medical Informatics Association. 31, 5, p. 1144-1150 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

RETHINKING THE POWER OF GRAPH CANONIZATION IN GRAPH REPRESENTATION LEARNING WITH STABILITY

Dong, Z., Zhang, M., Payne, P. R. O., Province, M. A., Cruchaga, C., Zhao, T., Li, F. & Chen, Y., 2024.

Research output: Contribution to conference › Paper › peer-review

1 Scopus citations

SARS-CoV-2 infection is associated with an increase in new diagnoses of schizophrenia spectrum and psychotic disorder: A study using the US national COVID cohort collaborative (N3C)

On behalf of the N3C Consortium, Rahman, A., Russell, M., Zheng, W., Eckrich, D., Ahmed, I., Wilcox, A., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A., Zhou, A., Williams, A. E., Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A. & Amor, B. & 114 others, Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Brown, D., Boudreau, E., Hill, E., Zampino, E., Carlson Marti, E., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Hayanga, J. W. A., Pincavitch, J., Clark, J., Harper, J. R., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Saltz, J., Loomba, J., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Brad-Well, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Dwain Cato, K., Murray, K., Kostka, K., Northington, L., Lee, A. P., Misquitta, L., Cot, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Morrison Saltz, M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O’Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbar, N., Sharafeldin, N., Sadan, O., Francis, P. A., Wung Burgoon, P., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O’Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., May 2024, In: PloS one. 19, 5 May, e0295891.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

sc2MeNetDrug: A computational tool to uncover inter-cell signaling targets and identify relevant drugs based on single cell RNA-seq data

Feng, J., Goedegebuure, S. P., Zeng, A., Bi, Y., Wang, T., Payne, P., Ding, L., DeNardo, D., Hawkins, W., Fields, R. C. & Li, F., Jan 2024, In: PLoS computational biology. 20, 1, e1011785.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Selection Bias from Data Processing in N3C

N3C Consortium, 2024, Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024. Institute of Electrical and Electronics Engineers Inc., p. 234-241 8 p. (Proceedings - 2024 IEEE 12th International Conference on Healthcare Informatics, ICHI 2024).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

The Brain Gene Registry: a data snapshot

Baldridge, D., Kaster, L., Sancimino, C., Srivastava, S., Molholm, S., Gupta, A., Oh, I., Lanzotti, V., Grewal, D., Riggs, E. R., Savatt, J. M., Hauck, R., Sveden, A., Constantino, J. N., Piven, J., Gurnett, C. A., Chopra, M., Hazlett, H. & Payne, P. R. O., Dec 2024, In: Journal of neurodevelopmental disorders. 16, 1, 17.

Research output: Contribution to journal › Article › peer-review

Open Access

The Intersections of COVID-19, HIV, and Race/Ethnicity: Machine Learning Methods to Identify and Model Risk Factors for Severe COVID-19 in a Large U.S. National Dataset

The National COVID Cohort Collaborative (N3C) Consortium, Oct 2024, In: AIDS and Behavior. 28, Suppl 1, p. 5-21 17 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

The prevalence of postacute sequelae of coronavirus disease 2019 in solid organ transplant recipients: Evaluation of risk in the National COVID Cohort Collaborative

National COVID Cohort Collaborative, Sep 2024, In: American Journal of Transplantation. 24, 9, p. 1675-1689 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Tree-based classification model for Long-COVID infection prediction with age stratification using data from the National COVID Cohort Collaborative

The National COVID Cohort Collaborative (N3C) Consortium, Dec 1 2024, In: JAMIA Open. 7, 4, ooae111.

Research output: Contribution to journal › Article › peer-review

Open Access

Using DeepSignalingFlow to mine signaling flows interpreting mechanism of synergy of cocktails

Zhang, H., Chen, Y., Payne, P. & Li, F., Dec 2024, In: npj Systems Biology and Applications. 10, 1, 92.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

2023

Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation

Xue, B., Said, A. S., Xu, Z., Liu, H., Shah, N., Yang, H., Payne, P. & Lu, C., Aug 4 2023, KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 5360-5371 12 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

4 Scopus citations

Association Between Socioeconomic Factors, Race, and Use of a Specialty Memory Clinic

Lewis, A., Gupta, A., Oh, I., Schindler, S. E., Ghoshal, N., Abrams, Z., Foraker, R., Snider, B. J., Morris, J. C., Balls-Berry, J., Gupta, M., Payne, P. R. O. & Lai, A. M., Oct 3 2023, In: Neurology. 101, 14, p. E1424-E1433

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

Clinician Perspectives on Barriers and Enablers to Implementing an Inpatient Oncology Early Warning System: A Mixed-Methods Study

Lyons, P. G., Chen, V., Sekhar, T. C., McEvoy, C. A., Kollef, M. H., Govindan, R., Westervelt, P., Vranas, K. C., Maddox, T. M., Geng, E. H., Payne, P. R. O. & Politi, M. C., 2023, In: JCO Clinical Cancer Informatics. 7, e2200104.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Early Empiric Antibiotic Use in Patients Hospitalized With COVID-19: A Retrospective Cohort Study

On behalf of the N3C Consortium, Widere, J. C., Davis, C. L., Loomba, J. J., Bell, T. D., Enfield, K. B., Barros, A. J., Amor, B., Bissell, M. M., Bradwell, K. R., Girvin, A. T., Manna, A., Qureshi, N., Chute, C. G., Pfaff, E. R., Gabriel, D., Hong, S. S., Kostka, K., Lehmann, H. P. & Moffitt, R. A. & 75 others, Morris, M., Palchuk, M. B., Zhang, X. T., Zhu, R. L., Austin, C. P., Gersing, K. R., Bozzette, S., Deacy, M., Garbarini, N., Kurilla, M. G., Michael, S. G., Rutter, J. L., Temple-O'Connor, M., Haendel, M. A., Bennett, T. D., Chute, C. G., Eichmann, D. A., Guinney, J., Kibbe, W. A., Liu, H., Payne, P. R. O., Pfaff, E. R., Robinson, P. N., Saltz, J. H., Spratt, H., Starren, J., Suver, C., Wilcox, A. B., Williams, A. E., Wu, C., Pfaff, E. R., Amor, B., Bissell, M. M., Clark, M., Girvin, A. T., Hong, S. S., Kostka, K., Lee, A. M., Miller, R. T., Morris, M., Palchuk, M. B., Walters, K. M., Haendel, M. A., Chute, C. G., Gersing, K. R., Walden, A., Walden, A., Chae, Y., Cook, C., Dest, A., Dietz, R. R., Dillon, T., Francis, P. A., Fuentes, R., Graves, A., McMurry, J. A., Neumann, A. J., O'Neil, S. T., Sheikh, U., Volz, A. M., Zampino, E., Saltz, M. M., Suver, C., Chute, C. G., Haendel, M. A., McMurry, J. A., Volz, A. M., Walden, A., Bramante, C., Harper, J. R., Hernandez, W., Koraishy, F. M., Mariona, F., Saha, A. & Vedula, S., Sep 1 2023, In: Critical care medicine. 51, 9, p. 1168-1176 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

Electronic health record data quality assessment and tools: a systematic review

Lewis, A. E., Weiskopf, N., Abrams, Z. B., Foraker, R., Lai, A. M., Payne, P. R. O. & Gupta, A., Oct 2023, In: Journal of the American Medical Informatics Association. 30, 10, p. 1730-1740 11 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

31 Scopus citations

Extraction of clinical phenotypes for Alzheimer's disease dementia from clinical notes using natural language processing

Oh, I. Y., Schindler, S. E., Ghoshal, N., Lai, A. M., Payne, P. R. O. & Gupta, A., Apr 1 2023, In: JAMIA Open. 6, 1, ooad014.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Factors Associated With Variability in the Performance of a Proprietary Sepsis Prediction Model Across 9 Networked Hospitals in the US

Lyons, P. G., Hofford, M. R., Yu, S. C., Michelson, A. P., Payne, P. R. O., Hough, C. L. & Singh, K., Jun 5 2023, In: JAMA Internal Medicine. 183, 6, p. 611-612 2 p.

Research output: Contribution to journal › Letter › peer-review

Open Access

24 Scopus citations

Hormone replacement therapy and COVID-19 outcomes in solid organ transplant recipients compared with the general population

the National COVID Cohort Collaborative, Jul 2023, In: American Journal of Transplantation. 23, 7, p. 1035-1047 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

How Are Leading Research Institutions Engaging with Data Sharing Tools and Programs?

Hall, E. S., Melton, G. B., Payne, P. R. O., Dorr, D. A. & Vawdrey, D. K., 2023, In: AMIA ... Annual Symposium proceedings. AMIA Symposium. 2023, p. 397-406 10 p.

Research output: Contribution to journal › Article › peer-review

Interpreting the Mechanism of Synergism for Drug Combinations Using Attention-Based Hierarchical Graph Pooling

Dong, Z., Zhang, H., Chen, Y., Payne, P. R. O. & Li, F., Sep 2023, In: Cancers. 15, 17, 4210.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Investigating the Impact of Temporal Labeling of Emergency Department Visits for COVID-19: Comparing Healthcare Disparities Analyses Using Comprehensive, Single-Site Data with National COVID Cohort Collaborative (N3C) Data

Jones, M., Winger, A., Wernz, C., Michel, J., Jiang, S., Zhou, A., Hilton, E. J., Zemmel, M., Sengupta, S., Barnes, K., Loomba, J., Brown, D. E., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A. & Williams, A. E. & 116 others, Southerland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Awori Hayanga, J. W., Pincavitch, J., Clark, J., Richard Harper, J., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2023, 2023 Systems and Information Engineering Design Symposium, SIEDS 2023. Institute of Electrical and Electronics Engineers Inc., p. 297-302 6 p. (2023 Systems and Information Engineering Design Symposium, SIEDS 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Machine Learning for Benchmarking Adolescent Idiopathic Scoliosis Surgery Outcomes

Gupta, A., Oh, I. Y., Kim, S., Marks, M. C., Payne, P. R. O., Ames, C. P., Pellise, F., Pahys, J. M., Fletcher, N. D., Newton, P. O. & Kelly, M. P., Aug 15 2023, In: Spine. 48, 16, p. 1138-1147 10 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Philip Payne

Research output

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