Research output per year
Research output per year
- 30 results
Search results
-
2023
Deer mastadenovirus B pneumonia in a white-tailed deer fawn
Hoskins, E., Hoffman, J., Ferro, P. J., Diaz-Delgado, J., Porter, B. F., Gomez, G. & Cliften, P., Sep 2023, In: Journal of Veterinary Diagnostic Investigation. 35, 5, p. 543-546 4 p.Research output: Contribution to journal › Article › peer-review
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2022
Establishment of Novel Neuroendocrine Carcinoma Patient-Derived Xenograft Models for Receptor Peptide-Targeted Therapy
Tran, C. G., Borbon, L. C., Mudd, J. L., Abusada, E., Aghaamiri, S., Ghosh, S. C., Vargas, S. H., Li, G., Beyer, G. V., McDonough, M., Li, R., Chan, C. H. F., Walsh, S. A., Wadas, T. J., O’dorisio, T., O’dorisio, M. S., Govindan, R., Cliften, P. F., Azhdarinia, A. & Bellizzi, A. M. & 3 others, , Apr 1 2022, In: Cancers. 14, 8, 1910.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Regulation of PGC1α Downstream of the Insulin Signaling Pathway Plays a Role in the Hepatic Proteotoxicity of Mutant α1-Antitrypsin Deficiency Variant Z
Rudnick, D. A., Huang, J., Hidvegi, T., Chu, A. S., Hale, P., Munanairi, A., Dietzen, D. J., Cliften, P. F., Tycksen, E., Lutkewitte, A. J., Finck, B. N., Pak, S. C., Silverman, G. A. & Perlmutter, D. H., Jul 2022, In: Gastroenterology. 163, 1, p. 270-284 15 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
2021
Genetic analysis of Pycr1 and Pycr2 in mice
Stum, M. G., Tadenev, A. L. D., Seburn, K. L., Miers, K. E., Poon, P. P., McMaster, C. R., Robinson, C., Kane, C., Silva, K. A., Cliften, P. F., Sundberg, J. P., Reinholdt, L. G., John, S. W. M. & Burgess, R. W., May 2021, In: Genetics. 218, 1, iyab048.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
2020
Diet Modifies Pioglitazone's Influence on Hepatic PPAR γ -Regulated Mitochondrial Gene Expression
Kulkarni, S., Huang, J., Tycksen, E., Cliften, P. F. & Rudnick, D. A., 2020, In: PPAR Research. 2020, 3817573.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
2019
UV Signature Mutations Reclassify Salivary High-grade Neuroendocrine Carcinomas as Occult Metastatic Cutaneous Merkel Cell Carcinomas
Sun, L., Cliften, P. F., Duncavage, E. J., Lewis, J. S. & Chernock, R. D., May 1 2019, In: American Journal of Surgical Pathology. 43, 5, p. 682-687 6 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
2018
A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities
Schriefer, A. E., Cliften, P. F., Hibberd, M. C., Sawyer, C., Brown-Kennerly, V., Burcea, L., Klotz, E., Crosby, S. D., Gordon, J. I. & Head, R. D., Nov 2018, In: Journal of Microbiological Methods. 154, p. 6-13 8 p.Research output: Contribution to journal › Article › peer-review
Open Access43 Scopus citations -
MAPINS, a highly efficient detection method that identifies insertional mutations and complex DNA rearrangements
Lin, H., Cliften, P. F. & Dutcher, S. K., Dec 1 2018, In: Plant Physiology. 178, 4, p. 1436-1447 12 p.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
2016
Postponing the hypoglycemic response to partial hepatectomy delays mouse liver regeneration
Huang, J., Schriefer, A. E., Cliften, P. F., Dietzen, D., Kulkarni, S., Sing, S., Monga, S. P. S. & Rudnick, D. A., Mar 1 2016, In: American Journal of Pathology. 186, 3, p. 587-599 13 p.Research output: Contribution to journal › Article › peer-review
Open Access29 Scopus citations -
2015
Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders
Fairfield, H., Srivastava, A., Ananda, G., Liu, R., Kircher, M., Lakshminarayana, A., Harris, B. S., Karst, S. Y., Dionne, L. A., Kane, C. C., Curtain, M., Berry, M. L., Ward-Bailey, P. F., Greenstein, I., Byers, C., Czechanski, A., Sharp, J., Palmer, K., Gudis, P. & Martin, W. & 19 others, , Jul 1 2015, In: Genome research. 25, 7, p. 948-957 10 p.Research output: Contribution to journal › Article › peer-review
Open Access43 Scopus citations -
Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Yu, J., Cliften, P. F., Juehne, T. I., Sinnwell, T. M., Sawyer, C. S., Sharma, M., Lutz, A., Tycksen, E., Johnson, M. R., Minton, M. R., Klotz, E. T., Schriefer, A. E., Yang, W., Heinz, M. E., Crosby, S. D. & Head, R. D., Sep 18 2015, In: BMC genomics. 16, 1, 710.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2
Yu, J., Liberton, M., Cliften, P. F., Head, R. D., Jacobs, J. M., Smith, R. D., Koppenaal, D. W., Brand, J. J. & Pakrasi, H. B., 2015, In: Scientific reports. 5, 1, 8132.Research output: Contribution to journal › Article › peer-review
Open Access278 Scopus citations -
2014
Identification of an epigenetic signature of early mouse liver regeneration that is disrupted by Zn-HDAC inhibition
Huang, J., Schriefer, A. E., Yang, W., Cliften, P. F. & Rudnick, D. A., Dec 18 2014, In: Epigenetics. 9, 11, p. 1521-1531 11 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Validation of a next-generation sequencing assay for clinical molecular oncology
Cottrell, C. E., Al-Kateb, H., Bredemeyer, A. J., Duncavage, E. J., Spencer, D. H., Abel, H. J., Lockwood, C. M., Hagemann, I. S., O'Guin, S. M., Burcea, L. C., Sawyer, C. S., Oschwald, D. M., Stratman, J. L., Sher, D. A., Johnson, M. R., Brown, J. T., Cliften, P. F., George, B., McIntosh, L. D. & Shrivastava, S. & 12 others, , Jan 2014, In: Journal of Molecular Diagnostics. 16, 1, p. 89-105 17 p.Research output: Contribution to journal › Article › peer-review
Open Access164 Scopus citations -
2013
Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells
Robbins, P. F., Lu, Y. C., El-Gamil, M., Li, Y. F., Gross, C., Gartner, J., Lin, J. C., Teer, J. K., Cliften, P., Tycksen, E., Samuels, Y. & Rosenberg, S. A., Jun 2013, In: Nature medicine. 19, 6, p. 747-752 6 p.Research output: Contribution to journal › Article › peer-review
Open Access905 Scopus citations -
Rare recessive loss-of-function methionyl-tRNA synthetase mutations presenting as a multi-organ phenotype
van Meel, E., Wegner, D. J., Cliften, P., Willing, M. C., White, F. V., Kornfeld, S. & Cole, F. S., Oct 8 2013, In: BMC Medical Genetics. 14, 1, 106.Research output: Contribution to journal › Article › peer-review
Open Access61 Scopus citations -
Sirt1 extends life span and delays aging in mice through the regulation of Nk2 Homeobox 1 in the DMH and LH
Satoh, A., Brace, C. S., Rensing, N., Cliften, P., Wozniak, D. F., Herzog, E. D., Yamada, K. A. & Imai, S. I., Sep 3 2013, In: Cell metabolism. 18, 3, p. 416-430 15 p.Research output: Contribution to journal › Article › peer-review
Open Access593 Scopus citations -
Targeted Exome Sequencing Integrated with Clinicopathological Information Reveals Novel and Rare Mutations in Atypical, Suspected and Unknown Cases of Alport Syndrome or Proteinuria
Chatterjee, R., Hoffman, M., Cliften, P., Seshan, S., Liapis, H. & Jain, S., Oct 10 2013, In: PloS one. 8, 10, e76360.Research output: Contribution to journal › Article › peer-review
Open Access51 Scopus citations -
2009
BAC library development for allotetraploid Leymus (Triticeae) wildryes enable comparative genetic analysis of lax-barrenstalk1 orthogene sequences and growth habit QTLs
Larson, S. R., Scheuring, C., Kaur, P., Cliften, P. F., Mott, I. W., Bushman, B. S., Dong, J. J., Zhang, Y., Zhang, X., Kiani, M., Wu, Y. H., Liu, Y. H., Zhang, H. B., Chatterton, N. J. & Wang, R. R. C., Nov 2009, In: Plant Science. 177, 5, p. 427-438 12 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Comparative genomics of protoploid Saccharomycetaceae
Souciet, J. L., Dujon, B., Gaillardin, C., Johnston, M., Baret, P. V., Cliften, P., Sherman, D. J., Weissenbach, J., Westhof, E., Wincker, P., Jubin, C., Poulain, J., Barbe, V., Ségurens, B., Artiguenave, F., Anthouard, V., Vacherie, B., Val, M. E., Fulton, R. S. & Minx, P. & 34 others, , Oct 2009, In: Genome research. 19, 10, p. 1696-1709 14 p.Research output: Contribution to journal › Article › peer-review
Open Access179 Scopus citations -
2008
Development and annotation of perennial Triticeae ESTs and SSR markers
Bushman, B. S., Larson, S. R., Mott, I. W., Cliften, P. F., Wang, R. R. C., Chatterton, N. J., Hernandez, A. G., Ali, S., Kim, R. W., Thimmapuram, J., Gong, G., Liu, L. & Mikel, M. A., Oct 2008, In: Genome. 51, 10, p. 779-788 10 p.Research output: Contribution to journal › Article › peer-review
35 Scopus citations -
2006
After the duplication: Gene loss and adaptation in saccharomyces genomes
Cliften, P. F., Fulton, R. S., Wilson, R. K. & Johnston, M., Feb 2006, In: Genetics. 172, 2, p. 863-872 10 p.Research output: Contribution to journal › Article › peer-review
Open Access76 Scopus citations -
2004
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
International Chicken Genome Sequencing Consortium, Dec 9 2004, In: Nature. 432, 7018, p. 695-716 22 p.Research output: Contribution to journal › Article › peer-review
Open Access2259 Scopus citations -
The post-genomic era for a select few
Cliften, P., Mar 7 2004, In: Genome biology. 5, 2, 308.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
2003
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
Cliften, P., Sudarsanam, P., Desikan, A., Fulton, L., Fulton, B., Majors, J., Waterston, R., Cohen, B. A. & Johnston, M., Jul 4 2003, In: Science. 301, 5629, p. 71-76 6 p.Research output: Contribution to journal › Article › peer-review
Open Access709 Scopus citations -
Yeast genome duplication was followed by asynchronous differentiation of duplicated genes
Langkjær, R. B., Cliften, P. F., Johnston, M. & Piškur, J., Feb 20 2003, In: Nature. 421, 6925, p. 848-852 5 p.Research output: Contribution to journal › Article › peer-review
119 Scopus citations -
2001
Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis
Cliften, P. F., Hillier, L. D. W., Fulton, L., Graves, T., Miner, T., Gish, W. R., Waterston, R. H. & Johnston, M., 2001, In: Genome research. 11, 7, p. 1175-1186 12 p.Research output: Contribution to journal › Article › peer-review
Open Access206 Scopus citations -
2000
Identifying a core RNA polymerase surface critical for interactions with a sigma-like specificity factor
Cliften, P. F., Jang, S. H. & Jaehning, J. A., 2000, In: Molecular and cellular biology. 20, 18, p. 7013-7023 11 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
1997
Identification of three regions essential for interaction between a σ- like factor and core RNA polymerase
Cliften, P. F., Park, J. Y., Davis, B. P., Jang, S. H. & Jaehning, J. A., Nov 1 1997, In: Genes and Development. 11, 21, p. 2897-2909 13 p.Research output: Contribution to journal › Article › peer-review
Open Access44 Scopus citations -
1996
SYR2, a gene necessary for syringomycin growth inhibition of Saccharomyces cerevisiae
Cliften, P., Wang, Y., Mochizuki, D., Miyakawa, T., Wangspa, R., Hughes, J. & Takemoto, J. Y., Mar 1996, In: Microbiology. 142, 3, p. 477-484 8 p.Research output: Contribution to journal › Article › peer-review
Open Access43 Scopus citations