Personal profile
Research interests
My research is focused on the development of personalized medicine strategies for cancer. I develop and use bioinformatics tools and methods for the analysis of high throughput sequence data and identification of biomarkers for diagnostic, prognostic and drug response prediction.
Mentoring
I am committed to all kinds of diversity in my lab and want all trainees to feel welcome and free to express themselves. I truly believe that academic and research enterprises are most effective when they represent a broad diversity of backgrounds, viewpoints, and experiences. I have mentored a number of trainees from under-represented groups. I am committed to understanding and addressing disparities in genomic testing through my own research. I am also working to improve equity, diversity and inclusion through my leadership role in the Cancer Genomics Consortium.
Available to Mentor:
- PhD Students
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Collaborations and top research areas from the last five years
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Exome sequencing of Hodgkin and non-Hodgkin composite lymphomas identifies shared somatic mutations indicative of common founding precursors
Gomez, F., Shea, L., Sharavanan, S. A., Russler-Germain, D., Mosior, M., Krysiak, K., Matlock, M., Skidmore, Z. L., Lee, Y.-S., Duncavage, E. J., O'Laughlin, M., Fronick, C., Fulton, R., Bartlett, N. L., Cashen, A. F., Griffith, M., Fehniger, T. A., Griffith, O. & Wartman, L. D., Jun 2026, In: Cancer Genetics. 304-305, p. 12-20 9 p.Research output: Contribution to journal › Article › peer-review
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Integrating interferon gamma receptor pathways, antigenicity, and immune contexture as predictors of immunotherapeutic strategies for mucosal melanomas
Monti, M., Picinoli, S., Bozzola, A., Ferrari, M., Bugatti, M., Pezzali, I., Carlomagno, M., Carta, G., Orlandi, M., Lora, G., Benerini Gatta, L., Missale, F., Ferrari, G., Baldazzi, V., Rezzola, S., Tabellini, G., Parolini, S., Manfredi, M., De Giorgis, V. & Marengo, E. & 10 others, , Mar 2026, In: Journal for ImmunoTherapy of Cancer. 14, 3Research output: Contribution to journal › Article › peer-review
Open Access -
Whole Exome Sequencing of Feline Oral Squamous Cell Carcinoma Reveals Genomic Parallels With Human Head and Neck Squamous Cell Carcinoma
Chu, S., Skidmore, Z. L., Warren, W., Fisk, B., Kim, D. Y., Peralta, S., Rodney, A., Bryant, J., Fronick, C., Skinner, O., Bell, C., Gruber, A., Bartl-Wilson, L., Neiberg, S., Bilyk, G., Coffman, J., Wischmann, K., Beckemen, T., Fischer, C. & Flaum, A. & 6 others, , 2026, (Accepted/In press) In: Veterinary and Comparative Oncology.Research output: Contribution to journal › Article › peer-review
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CeRTS: certainty retrieval token search in large language model clinical information extraction
Schimmelpfennig, L. E., Bhattarai, K., Oh, I. Y., Lever, J., Griffith, O., Griffith, M., Lai, A. & Abrams, Z. B., Oct 2025, In: Journal of Biomedical Informatics. 170, 104900.Research output: Contribution to journal › Article › peer-review
Open Access -
Genomic Data and Privacy
Myers, C. T., Kumar, R. D., Pilgram, L., Bonomi, L., Thomas, M., Griffith, O. L., Fullerton, S. M. & Gibbs, R. A., Jan 3 2025, In: Clinical chemistry. 71, 1, p. 10-17 8 p.Research output: Contribution to journal › Article › peer-review
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