Research output per year
Research output per year
Personal profile
Research interests
My research is focused on the development of personalized medicine strategies for cancer using genomic technologies with a particular focus on gene regulatory changes associated with breast cancer. I develop and uses bioinformatics and statistical methods for the analysis of high throughput sequence data and identification of biomarkers for diagnostic, prognostic and drug response prediction.
Mentoring
I am committed to all kinds of diversity in my lab and want all trainees to feel welcome and free to express themselves. I truly believe that academic and research enterprises are most effective when they represent a broad diversity of backgrounds, viewpoints, and experiences. I have mentored a number of trainees from under-represented groups. I am committed to understanding and addressing disparities in genomic testing through my own research. I am also working to improve equity, diversity and inclusion through my leadership role in the Cancer Genomics Consortium.
Available to Mentor:
- PhD/MSTP Students
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase
Krysiak, K., Danos, A. M., Saliba, J., McMichael, J. F., Coffman, A. C., Kiwala, S., Barnell, E. K., Sheta, L., Grisdale, C. J., Kujan, L., Pema, S., Lever, J., Ridd, S., Spies, N. C., Andric, V., Chiorean, A., Rieke, D. T., Clark, K. A., Reisle, C., Venigalla, A. C., & 45 others, Jan 6 2023, In: Nucleic acids research. 51, 1 D, p. D1230-D1241Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Computational prediction of MHC anchor locations guides neoantigen identification and prioritization
Xia, H., McMichael, J., Becker-Hapak, M., Onyeador, O. C., Buchli, R., McClain, E., Pence, P., Supabphol, S., Richters, M. M., Basu, A., Ramirez, C. A., Puig-Saus, C., Cotto, K. C., Freshour, S. L., Hundal, J., Kiwala, S., Goedegebuure, S. P., Johanns, T. M., Dunn, G. P., Ribas, A., & 5 others, Apr 2023, In: Science immunology. 8, 82, eabg2200.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Distinct clonal identities of B-ALLs arising after lenolidomide therapy for multiple myeloma
Barnell, E. K., Skidmore, Z. L., Newcomer, K. F., Chavez, M., Campbell, K. M., Cotto, K. C., Spies, N. C., Ruzinova, M. B., Wang, T., Abro, B., Kreisel, F., Parikh, B. A., Duncavage, E. J., Frater, J. L., Lee, Y. S., Hassan, A., King, J. A., Kohnen, D. R., Fiala, M. A., Welch, J., & 6 others, Jan 24 2023, In: Blood Advances. 7, 2, p. 236-245 10 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer
Cotto, K. C., Feng, Y. Y., Ramu, A., Richters, M., Freshour, S. L., Skidmore, Z. L., Xia, H., McMichael, J. F., Kunisaki, J., Campbell, K. M., Chen, T. H. P., Rozycki, E. B., Adkins, D., Devarakonda, S., Sankararaman, S., Lin, Y., Chapman, W. C., Maher, C. A., Arora, V., Dunn, G. P., & 4 others, Dec 2023, In: Nature communications. 14, 1, 1589.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Metagenomic Analysis of DNA Viruses with Targeted Sequence Capture of Canine Lobular Orbital Adenomas and Normal Conjunctiva
Schaefer, E. A. F., Chu, S., Wylie, K. M., Wylie, T. N., Griffith, O. L., Pearce, J. W., Johnson, G. C., Bryan, J. N. & Flesner, B. K., May 2023, In: Microorganisms. 11, 5, 1163.Research output: Contribution to journal › Article › peer-review
Open Access