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Muhammad Ali

Instructor in Psychiatry

 https://orcid.org/0000-0002-1399-6631
    • 1165
      Citations
    20192024

    Research activity per year

    Search results

    • 2024

      Comprehensive blood metabolomics profiling of Parkinson’s disease reveals coordinated alterations in xanthine metabolism

      de Lope, E. G., Loo, R. T. J., Rauschenberger, A., Ali, M., Pavelka, L., Marques, T. M., Gomes, C. P. C., Krüger, R., Glaab, E., Acharya, G., Aguayo, G., Alexandre, M., Ali, M., Ammerlann, W., Arena, G., Balling, R., Bassis, M., Batutu, R., Beaumont, K. & Becker, R. & 118 others, Bellora, C., Berchem, G., Berg, D., Bisdorff, A., Boussaad, I., Bouvier, D., Brockmann, K., Calmes, J., Castillo, L., Contesotto, G., De Bremaeker, N., Diederich, N., Dondelinger, R., Ramia, N. E., Esteves, D., Fagherazzi, G., Ferrand, J. Y., Frauenknecht, K., Gantenbein, M., Gasser, T., Gawron, P., Ghosh, S., Giraitis, M., Glaab, E., Goergen, M., De Lope, E. G., Graas, J., Graziano, M., Groues, V., Grünewald, A., Gu, W., Hammot, G., Hanff, A. M., Hansen, L., Heneka, M., Henry, E., Herbrink, S., Herzinger, S., Heymann, M., Hu, M., Hundt, A., Jacoby, N., Lebioda, J. J., Jarosz, Y., Jónsdóttir, S., Klopfenstein, Q., Klucken, J., Krüger, R., Lambert, P., Landoulsi, Z., Lentz, R., Liepelt, I., Liszka, R., Longhino, L., Lorentz, V., Lupu, P. C., Marques, T. M., Mackay, C., Maetzler, W., Marcus, K., Marques, G., Conde, P. M., May, P., Mcintyre, D., Mediouni, C., Meisch, F., Menster, M., Minelli, M., Mittelbronn, M., Mollenhauer, B., Mühlschlegel, F., Nati, R., Nehrbass, U., Nickels, S., Nicolai, B., Nicolay, J. P., Noor, F., Ostaszewski, M., Gomes, C. P. C., Pachchek, S., Pauly, C., Pauly, L., Pavelka, L., Perquin, M., Lima, R. R., Rauschenberger, A., Rawal, R., Bobbili, D. R., Roomp, K., Rosales, E., Rosety, I., Sandt, E., Sapienza, S., Satagopam, V., Schmitt, M., Schmitz, S., Schneider, R., Schwamborn, J., Severino, R., Sharify, A., Soboleva, E., Sokolowska, K., Thien, H., Thiry, E., Loo, R. T. J., Trefois, C., Trouet, J., Tsurkalenko, O., Vaillant, M., Valenti, M., Van Cutsem, G., Vega, C., Boas, L. V., Vyas, M., Wade-Martins, R., Wilmes, P., Wollscheid-Lengeling, E. & Zelimkhanov, G., Dec 2024, In: npj Parkinson's Disease. 10, 1, 68.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      4 Scopus citations

    • Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome

      Klee, M., Aho, V. T. E., May, P., Heintz-Buschart, A., Landoulsi, Z., Jónsdóttir, S. R., Pauly, C., Pavelka, L., Delacour, L., Kaysen, A., Krüger, R., Wilmes, P., Leist, A. K., Acharya, G., Aguayo, G., Alexandre, M., Ali, M., Ammerlann, W., Arena, G. & Bassis, M. & 106 others, Batutu, R., Beaumont, K., Béchet, S., Berchem, G., Bisdorff, A., Boussaad, I., Bouvier, D., Castillo, L., Contesotto, G., De Bremaeker, N., Dewitt, B., Diederich, N., Dondelinger, R., Ramia, N. E., Ferrari, A., Frauenknecht, K., Fritz, J., Gamio, C., Gantenbein, M., Gawron, P., Georges, L., Ghosh, S., Giraitis, M., Glaab, E., Goergen, M., Gómez De Lope, E., Graas, J., Graziano, M., Groues, V., Grünewald, A., Hammot, G., Hanff, A. M., Hansen, L., Heneka, M., Henry, E., Henry, M., Herbrink, S., Herzinger, S., Hundt, A., Jacoby, N., Jónsdóttir, S., Klucken, J., Kofanova, O., Krüger, R., Lambert, P., Landoulsi, Z., Lentz, R., Longhino, L., Lopes, A. F., Lorentz, V., Marques, T. M., Marques, G., Martins Conde, P., May, P., Mcintyre, D., Mediouni, C., Meisch, F., Mendibide, A., Menster, M., Minelli, M., Mittelbronn, M., Mtimet, S., Munsch, M., Nati, R., Nehrbass, U., Nickels, S., Nicolai, B., Nicolay, J. P., Noor, F., Gomes, C. P. C., Pachchek, S., Pauly, C., Pauly, L., Pavelka, L., Perquin, M., Pexaras, A., Rauschenberger, A., Rawal, R., Reddy Bobbili, D., Remark, L., Richard, I., Roland, O., Roomp, K., Rosales, E., Sapienza, S., Satagopam, V., Schmitz, S., Schneider, R., Schwamborn, J., Severino, R., Sharify, A., Soare, R., Soboleva, E., Sokolowska, K., Theresine, M., Thien, H., Thiry, E., Ting Jiin Loo, R., Trouet, J., Tsurkalenko, O., Vaillant, M., Vega, C., Vilas Boas, L., Wilmes, P., Wollscheid-Lengeling, E. & Zelimkhanov, G., May 2024, In: The journal of prevention of Alzheimer's disease. 11, 3, p. 759-768 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • Harmonization of CSF and imaging biomarkers in Alzheimer's disease: Need and practical applications for genetics studies and preclinical classification

      Timsina, J., Ali, M., Do, A., Wang, L., Western, D., Sung, Y. J. & Cruchaga, C., Jan 2024, In: Neurobiology of Disease. 190, 106373.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      4 Scopus citations

    • Post-GWAS multiomic functional investigation of the TNIP1 locus in Alzheimer's disease highlights a potential role for GPX3

      Panyard, D. J., Reus, L. M., Ali, M., Liu, J., Deming, Y. K., Lu, Q., Kollmorgen, G., Carboni, M., Wild, N., Visser, P. J., Bertram, L., Zetterberg, H., Blennow, K., Gobom, J., Western, D., Sung, Y. J., Carlsson, C. M., Johnson, S. C., Asthana, S. & Cruchaga, C. & 3 others, Tijms, B. M., Engelman, C. D. & Snyder, M. P., Jul 2024, In: Alzheimer's and Dementia. 20, 7, p. 5044-5053 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • Proteo-genomics of soluble TREM2 in cerebrospinal fluid provides novel insights and identifies novel modulators for Alzheimer’s disease

      Wang, L., Nykänen, N. P., Western, D., Gorijala, P., Timsina, J., Li, F., Wang, Z., Ali, M., Yang, C., Liu, M., Brock, W., Marquié, M., Boada, M., Alvarez, I., Aguilar, M., Pastor, P., Ruiz, A., Puerta, R., Orellana, A. & Rutledge, J. & 13 others, Oh, H., Greicius, M. D., Le Guen, Y., Perrin, R. J., Wyss-Coray, T., Jefferson, A., Hohman, T. J., Graff-Radford, N., Mori, H., Goate, A., Levin, J., Sung, Y. J. & Cruchaga, C., Dec 2024, In: Molecular neurodegeneration. 19, 1, 1.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      9 Scopus citations

    • Single-Cell Transcriptional Profiling and Gene Regulatory Network Modeling in Tg2576 Mice Reveal Gender-Dependent Molecular Features Preceding Alzheimer-Like Pathologies

      Ali, M., Huarte, O. U., Heurtaux, T., Garcia, P., Rodriguez, B. P., Grzyb, K., Halder, R., Skupin, A., Buttini, M. & Glaab, E., Feb 2024, In: Molecular Neurobiology. 61, 2, p. 541-566 26 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      9 Scopus citations

    • Single cell transcriptome analysis of the THY-Tau22 mouse model of Alzheimer’s disease reveals sex-dependent dysregulations

      Ali, M., Garcia, P., Lunkes, L. P., Sciortino, A., Thomas, M., Heurtaux, T., Grzyb, K., Halder, R., Coowar, D., Skupin, A., Buée, L., Blum, D., Buttini, M. & Glaab, E., Dec 2024, In: Cell Death Discovery. 10, 1, 119.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations
    • 2023

      Accurate long-read sequencing identified GBA1 as major risk factor in the Luxembourgish Parkinson’s study

      Pachchek, S., Landoulsi, Z., Pavelka, L., Schulte, C., Buena-Atienza, E., Gross, C., Hauser, A. K., Reddy Bobbili, D., Casadei, N., May, P., Krüger, R., Acharya, G., Aguayo, G., Alexandre, M., Ali, M., Ammerlann, W., Arena, G., Balling, R., Bassis, M. & Batutu, R. & 116 others, Beaumont, K., Becker, R., Bellora, C., Berchem, G., Berg, D., Bisdorff, A., Boussaad, I., Bouvier, D., Brockmann, K., Calmes, J., Castillo, L., Contesotto, G., De Bremaeker, N., Diederich, N., Dondelinger, R., E. Ramia, N., Esteves, D., Fagherazzi, G., Ferrand, J. Y., Frauenknecht, K., Gantenbein, M., Gasser, T., Gawron, P., Ghosh, S., Giraitis, M., Glaab, E., Goergen, M., Gómez De Lope, E., Graas, J., Graziano, M., Groues, V., Grünewald, A., Gu, W., Hammot, G., Hanff, A. M., Hansen, L., Heneka, M., Henry, E., Herbrink, S., Herzinger, S., Heymann, M., Hu, M., Hundt, A., Jacoby, N., Jaroslaw Lebioda, J., Jarosz, Y., Jónsdóttir, S., Klopfenstein, Q., Klucken, J., Krüger, R., Lambert, P., Lentz, R., Liepelt, I., Liszka, R., Longhino, L., Lorentz, V., Lupu, P. C., Marques, T. M., Mackay, C., Maetzler, W., Marcus, K., Marques, G., Martins Conde, P., Mcintyre, D., Mediouni, C., Meisch, F., Menster, M., Minelli, M., Mittelbronn, M., Mollenhauer, B., Mühlschlegel, F., Nati, R., Nehrbass, U., Nickels, S., Nicolai, B., Nicolay, J. P., Noor, F., Ostaszewski, M., P. C. Gomes, C., Pauly, C., Pauly, L., Pavelka, L., Perquin, M., Ramos Lima, R., Rauschenberger, A., Rawal, R., Roomp, K., Rosales, E., Rosety, I., Sandt, E., Sapienza, S., Satagopam, V., Schmitt, M., Schmitz, S., Schneider, R., Schwamborn, J., Severino, R., Sharify, A., Soboleva, E., Sokolowska, K., Thien, H., Thiry, E., Ting Jiin Loo, R., Trefois, C., Trouet, J., Tsurkalenko, O., Vaillant, M., Valenti, M., Van Cutsem, G., Vega, C., Vilas Boas, L., Vyas, M., Wade-Martins, R., Wilmes, P., Wollscheid-Lengeling, E. & Zelimkhanov, G., Dec 2023, In: npj Parkinson's Disease. 9, 1, 156.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      7 Scopus citations

    • Author Correction: Accurate long-read sequencing identified GBA1 as major risk factor in the Luxembourgish Parkinson’s study (npj Parkinson's Disease, (2023), 9, 1, (156), 10.1038/s41531-023-00595-w)

      on behalf of the NCER-PD Consortium, Pachchek, S., Landoulsi, Z., Pavelka, L., Schulte, C., Buena-Atienza, E., Gross, C., Hauser, A. K., Reddy Bobbili, D., Casadei, N., May, P., Krüger, R., Acharya, G., Aguayo, G., Alexandre, M., Ali, M., Ammerlann, W., Arena, G., Balling, R. & Bassis, M. & 117 others, Batutu, R., Beaumont, K., Becker, R., Bellora, C., Berchem, G., Berg, D., Bisdorff, A., Boussaad, I., Bouvier, D., Brockmann, K., Calmes, J., Castillo, L., Contesotto, G., De Bremaeker, N., Diederich, N., Dondelinger, R., E. Ramia, N., Esteves, D., Fagherazzi, G., Ferrand, J. Y., Frauenknecht, K., Gantenbein, M., Gasser, T., Gawron, P., Ghosh, S., Giraitis, M., Glaab, E., Goergen, M., Gómez De Lope, E., Graas, J., Graziano, M., Groues, V., Grünewald, A., Gu, W., Hammot, G., Hanff, A. M., Hansen, L., Heneka, M., Henry, E., Herbrink, S., Herzinger, S., Heymann, M., Hu, M., Hundt, A., Jacoby, N., Jaroslaw Lebioda, J., Jarosz, Y., Jónsdóttir, S., Klopfenstein, Q., Klucken, J., Krüger, R., Lambert, P., Lentz, R., Liepelt, I., Liszka, R., Longhino, L., Lorentz, V., Lupu, P. C., Marques, T. M., Mackay, C., Maetzler, W., Marcus, K., Marques, G., Martins Conde, P., Mcintyre, D., Mediouni, C., Meisch, F., Menster, M., Minelli, M., Mittelbronn, M., Mollenhauer, B., Mühlschlegel, F., Nati, R., Nehrbass, U., Nickels, S., Nicolai, B., Nicolay, J. P., Noor, F., Ostaszewski, M., P. C. Gomes, C., Pauly, C., Pauly, L., Pavelka, L., Perquin, M., Ramos Lima, R., Rauschenberger, A., Rawal, R., Roomp, K., Rosales, E., Rosety, I., Sandt, E., Sapienza, S., Satagopam, V., Schmitt, M., Schmitz, S., Schneider, R., Schwamborn, J., Severino, R., Sharify, A., Soboleva, E., Sokolowska, K., Thien, H., Thiry, E., Ting Jiin Loo, R., Trefois, C., Trouet, J., Tsurkalenko, O., Vaillant, M., Valenti, M., Van Cutsem, G., Vega, C., Vilas Boas, L., Vyas, M., Wade-Martins, R., Wilmes, P., Wollscheid-Lengeling, E. & Zelimkhanov, G., Dec 2023, In: npj Parkinson's Disease. 9, 1, 168.

      Research output: Contribution to journal › Comment/debate

      Open Access
      1 Scopus citations

    • Cell-free RNA signatures predict Alzheimer's disease

      Cisterna-García, A., Beric, A., Ali, M., Pardo, J. A., Chen, H. H., Fernandez, M. V., Norton, J., Gentsch, J., Bergmann, K., Budde, J., Perlmutter, J. S., Morris, J. C., Cruchaga, C., Botia, J. A. & Ibanez, L., Dec 15 2023, In: iScience. 26, 12, 108534.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • Large multi-ethnic genetic analyses of amyloid imaging identify new genes for Alzheimer disease

      Knight Alzheimer Disease Research Center (Knight ADRC), the Dominantly Inherited Alzheimer Network (DIAN), Alzheimer’s Disease Neuroimaging Initiative (ADNI), ADNI-DOD, A4 Study Team, the Australian Imaging Biomarkers, Lifestyle (AIBL) Study, Ali, M., Archer, D. B., Gorijala, P., Western, D., Timsina, J., Fernández, M. V., Chen, G., Gordon, B., Benzinger, T. L. S., Xiong, C., Morris, J. C., Bateman, R. J., Karch, C. M., McDade, E. & Sung, Y. J. & 1 others, Cruchaga, C., Dec 2023, In: Acta Neuropathologica Communications. 11, 1, 68.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations

    • Large-scale proteome and metabolome analysis of CSF implicates altered glucose and carbon metabolism and succinylcarnitine in Alzheimer's disease

      Panyard, D. J., McKetney, J., Deming, Y. K., Morrow, A. R., Ennis, G. E., Jonaitis, E. M., Van Hulle, C. A., Yang, C., Sung, Y. J., Ali, M., Kollmorgen, G., Suridjan, I., Bayfield, A., Bendlin, B. B., Zetterberg, H., Blennow, K., Cruchaga, C., Carlsson, C. M., Johnson, S. C. & Asthana, S. & 2 others, Coon, J. J. & Engelman, C. D., Dec 2023, In: Alzheimer's and Dementia. 19, 12, p. 5447-5470 24 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      16 Scopus citations
    • 2022

      Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes

      on behalf of the NCER-PD Consortium, Pavelka, L., Rauschenberger, A., Landoulsi, Z., Pachchek, S., May, P., Glaab, E., Krüger, R., Acharya, G., Aguayo, G., Alexandre, M., Ali, M., Allen, D., Ammerlann, W., Balling, R., Bassis, M., Beaumont, K., Becker, R., Bellora, C. & Berchem, G. & 107 others, Berg, D., Bisdorff, A., Brockmann, K., Calmes, J., Castillo, L., Contesotto, G., Diederich, N., Dondelinger, R., Esteves, D., Fagherazzi, G., Ferrand, J. Y., Gantenbein, M., Gasser, T., Gawron, P., Ghosh, S., Glaab, E., Gomes, C., De Lope, E. G., Goncharenko, N., Graas, J., Graziano, M., Groues, V., Grünewald, A., Gu, W., Hammot, G., Hanff, A. M., Hansen, L., Hansen, M., Heneka, M., Henry, E., Herbrink, S., Herenne, E., Herzinger, S., Heymann, M., Hu, M., Hundt, A., Jacoby, N., Lebioda, J. J., Jaroz, Y., Klopfenstein, Q., Lambert, P., Landoulsi, Z., Lentz, R., Liepelt, I., Liszka, R., Longhino, L., Lorentz, V., Lupu, P. C., Mackay, C., Maetzler, W., Marcus, K., Marques, G., Marques, T., May, P., Mcintyre, D., Mediouni, C., Meisch, F., Menster, M., Minelli, M., Mittelbronn, M., Mollenhauer, B., Mommaerts, K., Moreno, C., Moudio, S., Mühlschlegel, F., Nati, R., Nehrbass, U., Nickels, S., Nicolai, B., Nicolay, J. P., Oertel, W., Ostaszewski, M., Pachchek, S., Pauly, C., Pauly, L., Pavelka, L., Perquin, M., Lima, R. R., Rauschenberger, A., Rawal, R., Bobbili, D. R., Rosales, E., Rosety, I., Rump, K., Sandt, E., Satagopam, V., Schlesser, M., Schmitt, M., Schmitz, S., Schneider, R., Schwamborn, J., Sharify, A., Soboleva, E., Sokolowska, K., Terwindt, O., Thien, H., Thiry, E., Loo, R. T. J., Trefois, C., Trouet, J., Tsurkalenko, O., Vaillant, M., Valenti, M., Boas, L. V., Vyas, M., Wade-Martins, R. & Wilmes, P., Dec 1 2022, In: npj Parkinson's Disease. 8, 1, 102.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      11 Scopus citations

    • Computational Methods to Identify Cell-Fate Determinants, Identity Transcription Factors, and Niche-Induced Signaling Pathways for Stem Cell Research

      Ali, M., Ribeiro, M. M. & del Sol, A., 2022, Methods in Molecular Biology. Humana Press Inc., p. 83-109 27 p. (Methods in Molecular Biology; vol. 2471).

      Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

      2 Scopus citations

    • Genome-wide meta-analysis for Alzheimer’s disease cerebrospinal fluid biomarkers

      EADB consortium & The GR@ACE study group, Nov 2022, In: Acta Neuropathologica. 144, 5, p. 821-842 22 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      46 Scopus citations

    • Leveraging large multi-center cohorts of Alzheimer disease endophenotypes to understand the role of Klotho heterozygosity on disease risk

      Ali, M., Sung, Y. J., Wang, F., Fernández, M. V., Morris, J. C., Fagan, A. M., Blennow, K., Zetterberg, H., Heslegrave, A., Johansson, P. M., Svensson, J., Nellgård, B., Lleó, A., Alcolea, D., Clarimon, J., Rami, L., Molinuevo, J. L., Suárez-Calvet, M., Morenas-Rodríguez, E. & Kleinberger, G. & 6 others, Haass, C., Ewers, M., Levin, J., Farlow, M. R., Perrin, R. J. & Cruchaga, C., May 2022, In: PloS one. 17, 5 May, e0267298.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      9 Scopus citations

    • Murine roseolovirus does not accelerate amyloid-β pathology and human roseoloviruses are not over-represented in Alzheimer disease brains

      Bigley, T. M., Xiong, M., Ali, M., Chen, Y., Wang, C., Serrano, J. R., Eteleeb, A., Harari, O., Yang, L., Patel, S. J., Cruchaga, C., Yokoyama, W. M. & Holtzman, D. M., Dec 2022, In: Molecular neurodegeneration. 17, 1, 10.

      Research output: Contribution to journal › Article › peer-review

      10 Scopus citations

    • New insights into the genetic etiology of Alzheimer’s disease and related dementias

      EADB, GR@ACE, DEGESCO, EADI, GERAD, Demgene, FinnGen, ADGC & CHARGE, Apr 1 2022, In: Nature Genetics. 54, 4, p. 412-436 25 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      851 Scopus citations

    • Publisher Correction: Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes (npj Parkinson's Disease, (2022), 8, 1, (102), 10.1038/s41531-022-00342-7)

      on behalf of the NCER-PD Consortium, Pavelka, L., Rauschenberger, A., Landoulsi, Z., Pachchek, S., May, P., Glaab, E., Krüger, R., Acharya, G., Aguayo, G., Alexandre, M., Ali, M., Allen, D., Ammerlann, W., Balling, R., Bassis, M., Beaumont, K., Becker, R., Bellora, C. & Berchem, G. & 107 others, Berg, D., Bisdorff, A., Brockmann, K., Calmes, J., Castillo, L., Contesotto, G., Diederich, N., Dondelinger, R., Esteves, D., Fagherazzi, G., Ferrand, J. Y., Gantenbein, M., Gasser, T., Gawron, P., Ghosh, S., Glaab, E., Gomes, C., De Lope, E. G., Goncharenko, N., Graas, J., Graziano, M., Groues, V., Grünewald, A., Gu, W., Hammot, G., Hanff, A. M., Hansen, L., Hansen, M., Heneka, M., Henry, E., Herbrink, S., Herenne, E., Herzinger, S., Heymann, M., Hu, M., Hundt, A., Jacoby, N., Lebioda, J. J., Jaroz, Y., Klopfenstein, Q., Lambert, P., Landoulsi, Z., Lentz, R., Liepelt, I., Liszka, R., Longhino, L., Lorentz, V., Lupu, P. C., Mackay, C., Maetzler, W., Marcus, K., Marques, G., Marques, T., May, P., Mcintyre, D., Mediouni, C., Meisch, F., Menster, M., Minelli, M., Mittelbronn, M., Mollenhauer, B., Mommaerts, K., Moreno, C., Moudio, S., Mühlschlegel, F., Nati, R., Nehrbass, U., Nickels, S., Nicolai, B., Nicolay, J. P., Oertel, W., Ostaszewski, M., Pachchek, S., Pauly, C., Pauly, L., Pavelka, L., Perquin, M., Lima, R. R., Rauschenberger, A., Rawal, R., Bobbili, D. R., Rosales, E., Rosety, I., Rump, K., Sandt, E., Satagopam, V., Schlesser, M., Schmitt, M., Schmitz, S., Schneider, R., Schwamborn, J., Sharify, A., Soboleva, E., Sokolowska, K., Terwindt, O., Thien, H., Thiry, E., Loo, R. T. J., Trefois, C., Trouet, J., Tsurkalenko, O., Vaillant, M., Valenti, M., Boas, L. V., Vyas, M., Wade-Martins, R. & Wilmes, P., Dec 1 2022, In: npj Parkinson's Disease. 8, 1, 112.

      Research output: Contribution to journal › Comment/debate

      Open Access
      1 Scopus citations
    • 2021

      A computer-guided design tool to increase the efficiency of cellular conversions

      Jung, S., Appleton, E., Ali, M., Church, G. M. & del Sol, A., Dec 1 2021, In: Nature communications. 12, 1, 1659.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      23 Scopus citations

    • Altered sphingolipid function in Alzheimer's disease; a gene regulatory network approach

      Giovagnoni, C., Ali, M., Eijssen, L. M. T., Maes, R., Choe, K., Mulder, M., Kleinjans, J., del Sol, A., Glaab, E., Mastroeni, D., Delvaux, E., Coleman, P., Losen, M., Pishva, E., Martinez-Martinez, P. & van den Hove, D. L. A., Jun 2021, In: Neurobiology of Aging. 102, p. 178-187 10 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      11 Scopus citations

    • Characterization of DNA Methylomic Signatures in Induced Pluripotent Stem Cells During Neuronal Differentiation

      Imm, J., Pishva, E., Ali, M., Kerrigan, T. L., Jeffries, A., Burrage, J., Glaab, E., Cope, E. L., Jones, K. M., Allen, N. D. & Lunnon, K., Jul 1 2021, In: Frontiers in Cell and Developmental Biology. 9, 647981.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      7 Scopus citations
    • 2020

      Methods in epigenetics-based systems biology and their applications

      Jung, S., Ali, M. & Del Sol, A., Jan 1 2020, Epigenetics Methods. Elsevier, p. 615-646 32 p.

      Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

      1 Scopus citations
    • 2019

      Alzheimer's disease-associated (hydroxy)methylomic changes in the brain and blood

      Lardenoije, R., Roubroeks, J. A. Y., Pishva, E., Leber, M., Wagner, H., Iatrou, A., Smith, A. R., Smith, R. G., Eijssen, L. M. T., Kleineidam, L., Kawalia, A., Hoffmann, P., Luck, T., Riedel-Heller, S., Jessen, F., Maier, W., Wagner, M., Hurlemann, R., Kenis, G. & Ali, M. & 9 others, Del Sol, A., Mastroeni, D., Delvaux, E., Coleman, P. D., Mill, J., Rutten, B. P. F., Lunnon, K., Ramirez, A. & Van Den Hove, D. L. A., Nov 27 2019, In: Clinical Epigenetics. 11, 1, 164.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      77 Scopus citations

    • Synapse alterations precede neuronal damage and storage pathology in a human cerebral organoid model of CLN3-juvenile neuronal ceroid lipofuscinosis

      Gomez-Giro, G., Arias-Fuenzalida, J., Jarazo, J., Zeuschner, D., Ali, M., Possemis, N., Bolognin, S., Halder, R., Jäger, C., Kuper, W. F. E., Van Hasselt, P. M., Zaehres, H., Del Sol, A., Van Der Putten, H., Schöler, H. R. & Schwamborn, J. C., Dec 30 2019, In: Acta Neuropathologica Communications. 7, 1, 222.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      43 Scopus citations